CN189291

Overview
NameCN189291
Unique NameCN189291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_CHLL2 (Aminomethyltransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=gcvT PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 40/128 (31.25%), Postives = 65/128 (50.78%), Query Frame = 3
Query:   15 GLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPA-RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            G  LYG++++  V P+EA L W +   +  +G F+G E   +Q++  P     GF   G    R H ++++     IG + SG  SP L++ I    +     + GT V +E+RG  + G I  +PFV
Sbjct:  237 GYSLYGHEIDSTVNPLEARLKWVV---KMEKGPFIGKEAC-RQVELNPRYAVAGFSLDGRALPRQHFRLYNSDRQEIGTVCSGTLSPTLQEPIGTCSILREYSRPGTHVMVEIRGTMHQGVIRALPFV 360          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_BURVG (Aminomethyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=gcvT PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 45/134 (33.58%), Postives = 69/134 (51.49%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF------AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            AG+ LYG DM++ V+P++AGL W +      E  F+G   + +   +G     VG          G   R+H KV    G   GEITSG FSP ++++IA   V + + + G  V +++R K     + K+PFV
Sbjct:  239 AGMNLYGQDMDETVSPLDAGLAWTVDLSAPRE--FVGRPALER---DGTRAAFVGLILQKENGKAGGVLRAHQKVVTPHGE--GEITSGTFSPSMQESIAFARVPAAV-QLGDIVHVQIRDKQLPARVVKLPFV 364          
The following BLAST results are available for this feature:
BLAST of CN189291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
GCST_CHLL27.787e-1131.25Aminomethyltransferase OS=Chlorobium limicola (str... [more]
GCST_BURVG7.787e-1133.58Aminomethyltransferase OS=Burkholderia vietnamiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189291 ID=CN189291; Name=CN189291; organism=Citrus sinensis; type=EST; length=589bp
CTCCGACTTAAGCTGGCTTATGTTTATATGGTAATGACATGGAACAACAC
GTGACACCTGTAGAAGCTGGACTGACATGGGCCATAGGAAAGAGGAGGAG
AGCAGAAGGTGGCTTTCTAGGTGCTGAGAAAATACTCAAACAACTTGACG
AAGGTCCGCCAGTCAGACGTGTTGGATTCTTCGCTGGAGGTCCGCCTGCC
AGATCACACAGTAAGGTTCACGATGAGCAAGGGAATCCCATTGGAGAAAT
TACCAGTGGAGGATTCAGCCCCTGCCTCAAGAAGAATATAGCCATGGGAT
ATGTAAAATCTGGATTGCACAAGGCAGGCACAAAAGTTAAGATTGAGGTT
CGAGGAAAAGCCTACGATGGAAACATCACTAAAATGCCATTTGTGCCAAC
AAAATACTACAAGCCGTCTTAGTACATCTTTGTTGGTTCTGCTTATGGAA
GCTCTACTCGATTCCTGTTTTGACTTGTTTCATAAACATTGACTGCTCGA
GATTACTGTCTTTATTGCTAGCAGTTCTTTAATTCTGCAAATTCTTATGA
TTCTTGTTGCCTGAATAAAAGTGTTTACTTTAAAGCCCT
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