CN189291

Overview
NameCN189291
Unique NameCN189291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_LEPIN (Aminomethyltransferase OS=Leptospira interrogans GN=gcvT PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.240e-16
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 3
Query:   24 LYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 398
            LYG+++    TP+E+G+ W + ++   E  +  +EKIL Q   G P + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  ++S   K G  ++IE+R +     IT  PF+P
Sbjct:  243 LYGHELNDQWTPIESGIGWIVKEK---ENPYFSSEKILFQKKNGVPSKIVSFALTEAGVP--RENFRVLDSQGNEIGKTTSGTFSPSLKKGIGLALIQSEKIKDGEPIQIEIREQPKQAIITMKPFIP 365          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_LEPIC (Aminomethyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvT PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.240e-16
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 3
Query:   24 LYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 398
            LYG+++    TP+E+G+ W + ++   E  +  +EKIL Q   G P + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  ++S   K G  ++IE+R +     IT  PF+P
Sbjct:  243 LYGHELNDQWTPIESGIGWIVKEK---ENPYFSSEKILFQKKNGVPSKIVSFALTEAGVP--RENFRVLDSQGNEIGKTTSGTFSPSLKKGIGLALIQSEKIKDGEPIQIEIREQPKQAIITMKPFIP 365          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_PORGI (Aminomethyltransferase OS=Porphyromonas gingivalis GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.620e-16
Identity = 51/129 (39.53%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   15 GLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA---GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            G CLYGND+    +P+EAGL W    +   +   + + KI+++   G   R++  F     G P R H ++ + +G  IGE+TSG  SPCLKK I MGYV +   K GT++ I VRG+     I K PF
Sbjct:  235 GFCLYGNDICDTTSPIEAGLGWIT--KFTDDKMDMPSRKIMEEQKAGGLKRKLVAFELKDKGIP-RQHYEIANAEGQIIGEVTSGTMSPCLKKGIGMGYVATEFSKVGTELGIMVRGRQLKAEIVKPPF 360          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_PORG3 (Aminomethyltransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.620e-16
Identity = 51/129 (39.53%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   15 GLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA---GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            G CLYGND+    +P+EAGL W    +   +   + + KI+++   G   R++  F     G P R H ++ + +G  IGE+TSG  SPCLKK I MGYV +   K GT++ I VRG+     I K PF
Sbjct:  235 GFCLYGNDICDTTSPIEAGLGWIT--KFTDDKMDMPSRKIMEEQKAGGLKRKLVAFELKDKGIP-RQHYEIANAEGQIIGEVTSGTMSPCLKKGIGMGYVATEFSKVGTELGIMVRGRQLKAEIVKPPF 360          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_BACA2 (Aminomethyltransferase OS=Bacillus amyloliquefaciens (strain FZB42) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.609e-16
Identity = 43/127 (33.86%), Postives = 71/127 (55.91%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A L LYG ++ + +TP+EAG+ +A+  + + +  F G   + +Q ++G P + VG          H     + G PIGE+T+G  SP LKKNI +  +K+   + GT+V++E+R K     I + PF
Sbjct:  235 AKLALYGQELTKDITPIEAGIGFAV--KHKKDSDFFGKSVLREQKEKGAPRKLVGLEMIEKGIPRHGYAVKKDGVPIGEVTTGTQSPTLKKNIGLALIKTEFSEVGTEVEVEIRKKTVKAKIVRTPF 359          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_CYAP8 (Aminomethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A +CLY  D++ + TP+EAGL W +     ++G F+G + + KQ  +G   R VG    G     H      +G  +GE+TSG   P + K IA+ YV   L K GT +++E+RG+     + K PF
Sbjct:  238 AAMCLYSQDIDDNTTPLEAGLNWLV--HLDSKGDFIGRDILEKQKAQGVERRLVGLQMEGRHIARHGYPVLYEGKIVGEVTSGTLPPTVGKAIALAYVPRSLGKVGTPLEVEIRGQNCQAIVVKKPF 362          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_BACTN (Aminomethyltransferase OS=Bacteroides thetaiotaomicron GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.039e-16
Identity = 51/129 (39.53%), Postives = 69/129 (53.49%), Query Frame = 3
Query:   15 GLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGG-FLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            G CLYGND++   +P+EAGL W     +  EG  F+    + KQ  EG   + VGF     G P   +  V++E G  IG +TSG  SP  K  I MGYVK    K GT++ I++RG+     + K PF
Sbjct:  235 GFCLYGNDLDDKTSPIEAGLGWIT---KFVEGKEFINRPMLEKQKSEGTTRKLVGFEMIDRGIPRHGYELVNEE-GEGIGVVTSGTMSPTRKIGIGMGYVKPEYAKVGTEICIDMRGRKLKAIVVKPPF 359          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_SYNS9 (Aminomethyltransferase OS=Synechococcus sp. (strain CC9902) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.050e-15
Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A + LYG DM     P EAGL W +     A+  F+G + + +  + GP  R VG    G     H       G P+G +TSG +SP L++ IA+  + + L K GT + +E+RGKA    + + PF
Sbjct:  237 AAMHLYGQDMNADTNPFEAGLGWLVHLEMPAD--FIGRQALERAAETGPNKRLVGLKLEGRAIARHDYPVLHNGEPVGVVTSGTWSPTLEEPIALASIPTALAKLGTNLSVEIRGKAQPATVVRRPF 361          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_SYNY3 (Aminomethyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.791e-15
Identity = 48/127 (37.80%), Postives = 66/127 (51.97%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            AG+ LYG DM    TP+EAGL W +     ++G F+G   + +Q   G   R VG          H       G  +G +TSG  SP L+K IA+GYV + L K G ++++EVRGK Y   + K  F
Sbjct:  240 AGMGLYGQDMNDETTPLEAGLGWLV--HLDSKGDFIGRAVLTEQKANGVEKRLVGLEMLAKQIARHDYPILHNGEIMGIVTSGTLSPTLQKAIALGYVPTELAKVGQELEVEVRGKTYGIKVVKKLF 364          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_SYNPX (Aminomethyltransferase OS=Synechococcus sp. (strain WH8102) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.791e-15
Identity = 45/127 (35.43%), Postives = 65/127 (51.18%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A + LYG DM    TP EAGL W +      +  F+G + + +  + GP  R VG    G     H       G  +G +TSG +SP L++ IA+ YV + L K G ++ +E+RGKA    + K PF
Sbjct:  239 AAMHLYGMDMNAETTPFEAGLGWLVHLEMPVD--FVGRQALEQAAESGPTKRLVGLKLQGRAIARHDYPVLHNGETVGVVTSGTWSPTLEEPIALAYVPTALAKLGAELSVEIRGKAQPACVVKRPF 363          
The following BLAST results are available for this feature:
BLAST of CN189291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
GCST_LEPIN1.240e-1639.06Aminomethyltransferase OS=Leptospira interrogans G... [more]
GCST_LEPIC1.240e-1639.06Aminomethyltransferase OS=Leptospira interrogans s... [more]
GCST_PORGI1.620e-1639.53Aminomethyltransferase OS=Porphyromonas gingivalis... [more]
GCST_PORG31.620e-1639.53Aminomethyltransferase OS=Porphyromonas gingivalis... [more]
GCST_BACA23.609e-1633.86Aminomethyltransferase OS=Bacillus amyloliquefacie... [more]
GCST_CYAP84.713e-1635.43Aminomethyltransferase OS=Cyanothece sp. (strain P... [more]
GCST_BACTN8.039e-1639.53Aminomethyltransferase OS=Bacteroides thetaiotaomi... [more]
GCST_SYNS91.050e-1534.65Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_SYNY31.791e-1537.80Aminomethyltransferase OS=Synechocystis sp. (strai... [more]
GCST_SYNPX1.791e-1535.43Aminomethyltransferase OS=Synechococcus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189291 ID=CN189291; Name=CN189291; organism=Citrus sinensis; type=EST; length=589bp
CTCCGACTTAAGCTGGCTTATGTTTATATGGTAATGACATGGAACAACAC
GTGACACCTGTAGAAGCTGGACTGACATGGGCCATAGGAAAGAGGAGGAG
AGCAGAAGGTGGCTTTCTAGGTGCTGAGAAAATACTCAAACAACTTGACG
AAGGTCCGCCAGTCAGACGTGTTGGATTCTTCGCTGGAGGTCCGCCTGCC
AGATCACACAGTAAGGTTCACGATGAGCAAGGGAATCCCATTGGAGAAAT
TACCAGTGGAGGATTCAGCCCCTGCCTCAAGAAGAATATAGCCATGGGAT
ATGTAAAATCTGGATTGCACAAGGCAGGCACAAAAGTTAAGATTGAGGTT
CGAGGAAAAGCCTACGATGGAAACATCACTAAAATGCCATTTGTGCCAAC
AAAATACTACAAGCCGTCTTAGTACATCTTTGTTGGTTCTGCTTATGGAA
GCTCTACTCGATTCCTGTTTTGACTTGTTTCATAAACATTGACTGCTCGA
GATTACTGTCTTTATTGCTAGCAGTTCTTTAATTCTGCAAATTCTTATGA
TTCTTGTTGCCTGAATAAAAGTGTTTACTTTAAAGCCCT
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