CN189291

Overview
NameCN189291
Unique NameCN189291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_NEIMA (Aminomethyltransferase OS=Neisseria meningitidis serogroup A GN=gcvT PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.791e-15
Identity = 49/129 (37.98%), Postives = 74/129 (57.36%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAG-GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            AG+ LYGNDM+   +P+EAG+ W +  +  +   F+G   +L   ++G  V++VG   G G   R+H +V  ++G   GE TSG FSP LK++IA+  V       G   K+ +RGK  D  + K+PFV
Sbjct:  235 AGMNLYGNDMDDDTSPLEAGMGWTVDLKDESR-DFVGKAALLALKEKGVAVKQVGLLLGKGGILRAHMEVLTDKGK--GETTSGVFSPSLKQSIAIARVPKDFD--GDTAKVLIRGKEADVRVLKLPFV 358          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_GEOKA (Aminomethyltransferase OS=Geobacillus kaustophilus GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.791e-15
Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A L LYG ++   ++PVEAGL +A+  +   E  F+G   + +Q +EGPP R VG          H  +    G  +G +T+G  SP LKKNI +  VK+ +   G +V++++RGK    NI  +PF
Sbjct:  235 ACLPLYGQELSDSISPVEAGLGFAV--KTEKETPFIGQAVLKRQKEEGPPRRLVGIEMIDRGIPRHGYLVFADGEEVGFVTTGTQSPTLKKNIGLALVKADVAAIGREVEVDIRGKRLKANIVPIPF 359          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_ANASP (Aminomethyltransferase OS=Anabaena sp. (strain PCC 7120) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.791e-15
Identity = 45/127 (35.43%), Postives = 65/127 (51.18%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A + LYG D++ + TP+EAGL W +      +G F+G   + +Q   G   R +G    G     H       G  +G +TSG  SP L   +A+ YV S L K G  +++E+RGKAY   + K PF
Sbjct:  245 AAMALYGQDIDDNTTPLEAGLGWLV--HLDTKGDFIGRSVLEQQKATGVQRRLIGLQTQGRNIARHGYQVLSDGKVVGGVTSGTLSPTLGYPVALAYVPSKLAKVGQPLEVEIRGKAYPAVVVKRPF 369          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_SYNR3 (Aminomethyltransferase OS=Synechococcus sp. (strain RCC307) GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.055e-15
Identity = 44/127 (34.65%), Postives = 67/127 (52.76%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A + LYGNDM+ + +P+E GL W +      E  F+G E + +Q  EG   + VG    G     H       G P+G +TSG FSP L+  +A+  V++ L K G ++ +E+RG+     + K PF
Sbjct:  230 AAMHLYGNDMDANTSPLECGLGWLVHLEMPIE--FVGREALERQTAEGVSRKLVGLQLQGRAIARHDYPVLHNGEPVGVVTSGTFSPTLEHPVALASVRADLAKLGNELMVEIRGRQEPAVVVKRPF 354          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_SYNP2 (Aminomethyltransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.161e-14
Identity = 47/127 (37.01%), Postives = 62/127 (48.82%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            AGL LYG DM+   TP+EAGL W I  + +    F+  + +  Q   G   R VG    G     H       G  +G +TSG  SP L+K IA+ Y+     K G  V +E+RGK Y   + K PF
Sbjct:  233 AGLHLYGQDMDDDTTPLEAGLGWLIHWQEK--DAFIAKDILQTQKAAGVQRRLVGLEMQGRGIARHDYSVLVNGEAVGLVTSGTMSPTLEKAIALAYLPLEFSKVGQAVTVEIRGKQYPAQVVKKPF 357          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_LEPBL (Aminomethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.516e-14
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = 3
Query:   24 LYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 398
            LYG+++    TP+E+G+ W + +++     +  + KIL Q   G   + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  +++   K G  ++IE+R +     IT  PF+P
Sbjct:  243 LYGHELNNQWTPIESGIGWIVKEKKNP---YFSSGKILSQKKNGTEFKIVAFALTEAGVP--RENFRVLDFQGNEIGKTTSGTFSPSLKKGIGLASIRTEKIKDGEPIQIEIREQPKQAIITTKPFIP 365          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_LEPBJ (Aminomethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.516e-14
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = 3
Query:   24 LYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 398
            LYG+++    TP+E+G+ W + +++     +  + KIL Q   G   + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  +++   K G  ++IE+R +     IT  PF+P
Sbjct:  243 LYGHELNNQWTPIESGIGWIVKEKKNP---YFSSGKILSQKKNGTEFKIVAFALTEAGVP--RENFRVLDFQGNEIGKTTSGTFSPSLKKGIGLASIRTEKIKDGEPIQIEIREQPKQAIITTKPFIP 365          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_SYNPW (Aminomethyltransferase OS=Synechococcus sp. (strain WH7803) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.980e-14
Identity = 44/127 (34.65%), Postives = 61/127 (48.03%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A + LYG DM+   TP EAGL W +         F G   + +  D GP  R VG    G     H       G   G ITSG +SP L++ IA+ YV + L K G ++ +E+RG+     + + PF
Sbjct:  241 AAMHLYGQDMDADTTPFEAGLGWLV--HLEMPSTFTGRAALERAADSGPSRRLVGLKLKGRAIARHGYPVIHNGEQAGAITSGSWSPTLQEAIALAYVPTALAKVGQELGVEIRGQVQAATVVRRPF 365          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_NEIMB (Aminomethyltransferase OS=Neisseria meningitidis serogroup B GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.980e-14
Identity = 48/129 (37.21%), Postives = 73/129 (56.59%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVG-FFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            AG+ LYGNDM+   +P+EAG+ W +  +  +   F+G   +L   ++G  V++VG     G   R+H +V  ++G   GE TSG FSP LK++IA+  V       G   K+ +RGK  D  + K+PFV
Sbjct:  235 AGMNLYGNDMDDDTSPLEAGMGWTVDLKDESR-DFVGKAALLALKEKGVAVKQVGLLLEKGGILRAHMEVLTDKGQ--GETTSGVFSPSLKQSIAIARVPKDFD--GDTAKVLMRGKEVDVRVLKLPFV 358          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_THISH (Aminomethyltransferase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.586e-14
Identity = 52/129 (40.31%), Postives = 70/129 (54.26%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            AG+ LYG DM++ V+P+E+GL W +     AE  F+G   + KQ   G   R VG    G    R H +V        GEITSGGFSP L  +IA+  V +G    G +V+++VRGK     + K PFV
Sbjct:  231 AGMNLYGQDMDEQVSPLESGLAWTVA-FEPAERDFVGRAALEKQKAAGGLRRFVGLVLEGRGVLRGHMRVLCGAAGE-GEITSGGFSPTLGVSIALARVPAG---TGERVEVDVRGKPQPARLVKPPFV 354          
The following BLAST results are available for this feature:
BLAST of CN189291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
GCST_NEIMA1.791e-1537.98Aminomethyltransferase OS=Neisseria meningitidis s... [more]
GCST_GEOKA1.791e-1536.22Aminomethyltransferase OS=Geobacillus kaustophilus... [more]
GCST_ANASP1.791e-1535.43Aminomethyltransferase OS=Anabaena sp. (strain PCC... [more]
GCST_SYNR33.055e-1534.65Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_SYNP21.161e-1437.01Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_LEPBL1.516e-1435.94Aminomethyltransferase OS=Leptospira borgpeterseni... [more]
GCST_LEPBJ1.516e-1435.94Aminomethyltransferase OS=Leptospira borgpeterseni... [more]
GCST_SYNPW1.980e-1434.65Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_NEIMB1.980e-1437.21Aminomethyltransferase OS=Neisseria meningitidis s... [more]
GCST_THISH2.586e-1440.31Aminomethyltransferase OS=Thioalkalivibrio sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189291 ID=CN189291; Name=CN189291; organism=Citrus sinensis; type=EST; length=589bp
CTCCGACTTAAGCTGGCTTATGTTTATATGGTAATGACATGGAACAACAC
GTGACACCTGTAGAAGCTGGACTGACATGGGCCATAGGAAAGAGGAGGAG
AGCAGAAGGTGGCTTTCTAGGTGCTGAGAAAATACTCAAACAACTTGACG
AAGGTCCGCCAGTCAGACGTGTTGGATTCTTCGCTGGAGGTCCGCCTGCC
AGATCACACAGTAAGGTTCACGATGAGCAAGGGAATCCCATTGGAGAAAT
TACCAGTGGAGGATTCAGCCCCTGCCTCAAGAAGAATATAGCCATGGGAT
ATGTAAAATCTGGATTGCACAAGGCAGGCACAAAAGTTAAGATTGAGGTT
CGAGGAAAAGCCTACGATGGAAACATCACTAAAATGCCATTTGTGCCAAC
AAAATACTACAAGCCGTCTTAGTACATCTTTGTTGGTTCTGCTTATGGAA
GCTCTACTCGATTCCTGTTTTGACTTGTTTCATAAACATTGACTGCTCGA
GATTACTGTCTTTATTGCTAGCAGTTCTTTAATTCTGCAAATTCTTATGA
TTCTTGTTGCCTGAATAAAAGTGTTTACTTTAAAGCCCT
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