CN189291

Overview
NameCN189291
Unique NameCN189291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_THEP3 (Aminomethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.586e-14
Identity = 48/136 (35.29%), Postives = 72/136 (52.94%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 413
            AGL LYGN++ + +TP+EAG  + +   +  +G F+G + +LKQ +EG   + VGF     G P   +    D Q   IG +T+G FSP LKKNI +  + S   + G +++I +R K     I    F    Y K
Sbjct:  238 AGLPLYGNELSEEITPLEAGFEFFV---KFDKGNFIGKDALLKQKEEGLKRKIVGFEMIDNGIPRHGYEVRADNQ--KIGYVTTGYFSPTLKKNIGLALIDSKYAQLGNQIEIVIRNKPLKALIISKNFYKKNYKK 368          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_SYNS3 (Aminomethyltransferase OS=Synechococcus sp. (strain CC9311) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.586e-14
Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A + LYG DM+   TP EAGL W +     A   F+G + + +  ++GP  R VG    G     H       G  +G +TSG +SP L++ IA+  +   L K GT++ +E+RG+     + K PF
Sbjct:  241 AAMHLYGQDMDAATTPFEAGLGWLVHLEMPAL--FIGRQALEQAAEQGPSKRLVGLKLQGRSIARHDYPVIHNGATVGVVTSGSWSPTLQEPIALASLPPALAKLGTELSVEIRGQLQPATVVKRPF 365          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_THETN (Aminomethyltransferase OS=Thermoanaerobacter tengcongensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.378e-14
Identity = 45/134 (33.58%), Postives = 70/134 (52.24%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 413
            AGL LYGN++ + +TP+EAGL + +   +  +G F+G + +LKQ ++G   + VGF   G     H          IG +T+G FSP LKKNI +  + S   + G ++++ +R K     I    F    Y K
Sbjct:  244 AGLPLYGNELGEDITPLEAGLGFFV---KFDKGNFIGKDALLKQKEQGLKRKLVGFEMIGNGIPRHGYEVQADNQKIGYVTTGYFSPTLKKNIGLALIDSKYAQIGNQIEVIIRNKPLKAVIVDKNFYKKNYKK 374          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_THEPX (Aminomethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.411e-14
Identity = 47/137 (34.31%), Postives = 75/137 (54.74%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHS-KVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 413
            AGL LYGN++ + +TP+EAG  + +   +  +G F+G + +LKQ +EG   + VGF     G P   +  + H+++   IG +T+G FSP LKKNI +  + S   + G +++I +R K     I    F    Y K
Sbjct:  238 AGLPLYGNELSEEITPLEAGFEFFV---KFDKGNFIGKDALLKQKEEGLKRKIVGFEMIDNGIPRHGYEVRAHNQK---IGYVTTGYFSPTLKKNIGLALIDSKYAQLGNQIEIVIRNKPLKALIISKNFYKKNYKK 368          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_CARHZ (Aminomethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.411e-14
Identity = 46/129 (35.66%), Postives = 71/129 (55.04%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A L LYG+++   +TP+EAGL WA+   +     F+G E +L Q + G   + VG      G P + +  V +++G  +G +TSG F+P LKKN+AM  V     + GT+V + +RGK     +   PF
Sbjct:  232 ACLPLYGHELSAEITPLEAGLGWAVKFNKE---DFIGKEALLAQKNAGLKRKIVGLEMIGAGIPRQGYEIVFNQRG--VGFVTSGTFAPFLKKNLAMAMVDLEAAEIGTEVDVIIRGKGVRARVISRPF 355          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_BACFR (Aminomethyltransferase OS=Bacteroides fragilis GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.411e-14
Identity = 48/129 (37.21%), Postives = 68/129 (52.71%), Query Frame = 3
Query:   15 GLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            G CLYGND++   +P+EAGL W     +  +G  F     + KQ  EG   + VGF     G P   + ++   +G+ IG +TSG  SP  K  I MGYVK    K GT++ I++RG+     + K PF
Sbjct:  235 GFCLYGNDLDDTTSPIEAGLGWIT---KFVDGKNFTNRSMLEKQKAEGTVRKLVGFEMIDRGIPRHGY-ELTTAEGDKIGVVTSGTMSPIRKIGIGMGYVKPEYSKIGTEICIDMRGRKLKAVVVKPPF 359          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_BACFN (Aminomethyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.411e-14
Identity = 48/129 (37.21%), Postives = 68/129 (52.71%), Query Frame = 3
Query:   15 GLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            G CLYGND++   +P+EAGL W     +  +G  F     + KQ  EG   + VGF     G P   + ++   +G+ IG +TSG  SP  K  I MGYVK    K GT++ I++RG+     + K PF
Sbjct:  235 GFCLYGNDLDDTTSPIEAGLGWIT---KFVDGKNFTNRSMLEKQKAEGTVRKLVGFEMIDRGIPRHGY-ELTTAEGDKIGVVTSGTMSPIRKIGIGMGYVKPEYSKIGTEICIDMRGRKLKAVVVKPPF 359          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_ALCBS (Aminomethyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.411e-14
Identity = 50/128 (39.06%), Postives = 68/128 (53.12%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            AGL LYGNDM++ +TP EA + W +    R    F+G + +L Q + G   +      G    R+H KV    G   GEITSG FSP L K+IA+  + +G   A  KV +E+R K     + K PFV
Sbjct:  229 AGLNLYGNDMDESITPWEANMGWTVMLNDRE---FIGRQPLLNQKENGHSEQVGLILEGKGVLRAHQKVLMPNGEE-GEITSGTFSPTLGKSIALARLPAG---ATGKVDVEIRNKRQVAQVVKPPFV 349          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_PROMA (Aminomethyltransferase OS=Prochlorococcus marinus GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.827e-14
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            AG+ LYGND+    TP EAGL W +      E  F+G   ++KQ +EG   + V     G            +   +GEITSG +SP L + IA+ Y+   L K GT V +++R K +   + K PF
Sbjct:  244 AGMPLYGNDINNTTTPFEAGLGWLVHLETPDE--FIGKAALVKQTNEGINKKLVALKIEGRAIARKGYQIMFKNKFVGEITSGSWSPTLNEGIALAYLPIDLTKIGTAVSVQIRDKLHTAIVAKKPF 368          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_PROM1 (Aminomethyltransferase OS=Prochlorococcus marinus (strain NATL1A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.283e-13
Identity = 44/129 (34.11%), Postives = 70/129 (54.26%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A + LYGND+    TP EAGL W +         F+G + + KQ + G   + VG      G   + +  +++ +   +G +TSG +SP L+K IA+ YV S + K  T++++E+RGK +   I K PF
Sbjct:  243 ASMHLYGNDINLDTTPFEAGLGWLV--HLEMPNDFIGRKALEKQAEVGTQKKLVGIQVLDKGIARKGYPVLYNSE--TVGIVTSGTWSPTLQKPIALAYVPSEIAKVNTQIEVEIRGKKHPAIIVKRPF 367          
The following BLAST results are available for this feature:
BLAST of CN189291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
GCST_THEP32.586e-1435.29Aminomethyltransferase OS=Thermoanaerobacter pseud... [more]
GCST_SYNS32.586e-1433.86Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_THETN3.378e-1433.58Aminomethyltransferase OS=Thermoanaerobacter tengc... [more]
GCST_THEPX4.411e-1434.31Aminomethyltransferase OS=Thermoanaerobacter sp. (... [more]
GCST_CARHZ4.411e-1435.66Aminomethyltransferase OS=Carboxydothermus hydroge... [more]
GCST_BACFR4.411e-1437.21Aminomethyltransferase OS=Bacteroides fragilis GN=... [more]
GCST_BACFN4.411e-1437.21Aminomethyltransferase OS=Bacteroides fragilis (st... [more]
GCST_ALCBS4.411e-1439.06Aminomethyltransferase OS=Alcanivorax borkumensis ... [more]
GCST_PROMA9.827e-1435.43Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_PROM11.283e-1334.11Aminomethyltransferase OS=Prochlorococcus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189291 ID=CN189291; Name=CN189291; organism=Citrus sinensis; type=EST; length=589bp
CTCCGACTTAAGCTGGCTTATGTTTATATGGTAATGACATGGAACAACAC
GTGACACCTGTAGAAGCTGGACTGACATGGGCCATAGGAAAGAGGAGGAG
AGCAGAAGGTGGCTTTCTAGGTGCTGAGAAAATACTCAAACAACTTGACG
AAGGTCCGCCAGTCAGACGTGTTGGATTCTTCGCTGGAGGTCCGCCTGCC
AGATCACACAGTAAGGTTCACGATGAGCAAGGGAATCCCATTGGAGAAAT
TACCAGTGGAGGATTCAGCCCCTGCCTCAAGAAGAATATAGCCATGGGAT
ATGTAAAATCTGGATTGCACAAGGCAGGCACAAAAGTTAAGATTGAGGTT
CGAGGAAAAGCCTACGATGGAAACATCACTAAAATGCCATTTGTGCCAAC
AAAATACTACAAGCCGTCTTAGTACATCTTTGTTGGTTCTGCTTATGGAA
GCTCTACTCGATTCCTGTTTTGACTTGTTTCATAAACATTGACTGCTCGA
GATTACTGTCTTTATTGCTAGCAGTTCTTTAATTCTGCAAATTCTTATGA
TTCTTGTTGCCTGAATAAAAGTGTTTACTTTAAAGCCCT
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