CN189291

Overview
NameCN189291
Unique NameCN189291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_GEOSW (Aminomethyltransferase OS=Geobacillus sp. (strain WCH70) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.283e-13
Identity = 43/127 (33.86%), Postives = 68/127 (53.54%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A L LYG ++ + +TP+EAGL +A+   + A+  F+G + + KQ +EG   + VG          H       G  IG +T+G  SP LKKNI +  +K+   +  T+V++E+RGK     +   PF
Sbjct:  235 ATLPLYGQELSKDITPIEAGLGFAVKTNKDAD--FIGKDVLKKQKEEGTARKLVGIEMIDKGIPRHGYKVFANGEEIGFVTTGTQSPTLKKNIGLALIKTEFTEMDTEVEVEIRGKRLKAKVIATPF 359          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_DESHY (Aminomethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.676e-13
Identity = 50/135 (37.04%), Postives = 73/135 (54.07%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 413
            A L LYGN++   +TP+EAGL + +   +  +  F+G E +  Q ++G P + VG        ARSH  +  E G  IG ITSG FSP L KNIA+G +     + G  + + +RGKA      K   +P+ +YK
Sbjct:  237 ARLPLYGNELGPDITPLEAGLGFFV---KLEKDNFIGKEALSAQKEKGVPRKLVGLEMIERGIARSHYPLQKE-GKEIGFITSGSFSPTLNKNIALGLIPPEYAQIGETLDVIIRGKA-----VKARIIPSLFYK 362          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_DESHD (Aminomethyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.676e-13
Identity = 50/135 (37.04%), Postives = 73/135 (54.07%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 413
            A L LYGN++   +TP+EAGL + +   +  +  F+G E +  Q ++G P + VG        ARSH  +  E G  IG ITSG FSP L KNIA+G +     + G  + + +RGKA      K   +P+ +YK
Sbjct:  237 ARLPLYGNELGPDITPLEAGLGFFV---KLEKDNFIGKEALSAQKEKGVPRKLVGLEMIERGIARSHYPLQKE-GKEIGFITSGSFSPTLNKNIALGLIPPEYAQIGETLDVIIRGKA-----VKARIIPSLFYK 362          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_BACV8 (Aminomethyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.189e-13
Identity = 48/129 (37.21%), Postives = 66/129 (51.16%), Query Frame = 3
Query:   15 GLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            G CLYGND+    +P+EAGL W     +  EG  F     + KQ  EG   + + F     G P   +  V+ + G  IGE+TSG  SP  K  I MGYV++     GT++ I+VRG+     + K PF
Sbjct:  235 GFCLYGNDLSDTTSPLEAGLGWIT---KFVEGKNFTSRALLEKQKAEGLKRKLIAFEMVDRGIPRHGYELVNAD-GEKIGEVTSGTMSPMRKIGIGMGYVQTAYTALGTEIFIDVRGRKLKAVVVKAPF 359          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_PROA2 (Aminomethyltransferase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13
Identity = 46/128 (35.94%), Postives = 66/128 (51.56%), Query Frame = 3
Query:   15 GLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPA-RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            G  LYG+++ +  +P+EA L W     R  +G F+G E  +  +D  P    VGF        R    V++    P+G + SG  SP LK+ I    V  G  K+GT + +EVRGK Y G + K+PFV
Sbjct:  237 GYPLYGHEINRETSPIEARLKWVT---RLDKGNFVGRESCVA-VDINPQRTVVGFMMHERAIPRQGFTVYNRDRKPLGSVCSGTMSPTLKQPIGTADVPRGYMKSGTPLYLEVRGKFYKGEVVKLPFV 360          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_ANOFW (Aminomethyltransferase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.859e-13
Identity = 43/127 (33.86%), Postives = 64/127 (50.39%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A L LYG ++ + +TP+EAGL +A+   +  +  F G E + KQ +EG P R VG          H          IG +T+G  SP LKKNI +  + +      T+V+++VRGK     +   PF
Sbjct:  235 ACLPLYGQELAKDITPIEAGLGFAVKTNKDVD--FFGKEILKKQKEEGAPRRLVGIEMIDKGIARHGYAVYVNNEQIGFVTTGTQSPTLKKNIGLALISTAFSSLDTEVEVDVRGKRLKARVVATPF 359          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_SYMTH (Aminomethyltransferase OS=Symbiobacterium thermophilum GN=gcvT PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.877e-13
Identity = 42/129 (32.56%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A L LYG+++     P+EAGL +A+  ++  +  F+G + + +  ++GP  + VG      G P + +       G  +GE+T+G FSP L+KNIA+ YV       GT+V++ +RG+A    + + PF
Sbjct:  244 AKLPLYGHEISDQHNPLEAGLGFAVKLKKGVD--FIGRDALARIKEQGPTRKLVGIEMIDRGVPRQGYPVAVG--GEVVGEVTTGSFSPTLEKNIALAYVPVAHSAVGTEVEVIIRGRALKARVVETPF 368          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_NITEU (Aminomethyltransferase OS=Nitrosomonas europaea GN=gcvT PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.877e-13
Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRR--VGF-FAGGPPARSHSKVHDEQGNPI--GEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            AG+ LYG DM++ V P+E+GL W +    ++E  F G + +L+      PV R  VG         R+H KV   Q      GEITSGGFSP L ++IA+  + +G+  AG +V + VR K     + K PFV
Sbjct:  232 AGMNLYGQDMDETVNPLESGLAWTVD--LKSERDFTGKQTLLE-----TPVNRQLVGLVLLDKGVLRNHQKVITRQEGEAGEGEITSGGFSPTLNQSIALARIPAGI-AAGEQVHVVVRDKQLAAKVVKYPFV 356          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_LEGPL (Aminomethyltransferase OS=Legionella pneumophila (strain Lens) GN=gcvT PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.877e-13
Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            AG+ LYG DM++  TP+E+GLTW + K    + GF+G   ++ Q  +G   + VG          H +    +G P G ITSG +SP L+++IA+  V     + G +V +++RGK     + K  F+
Sbjct:  231 AGMLLYGQDMDETTTPLESGLTWTV-KWEPEDRGFIGMGALVSQKQQGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPV---ETGEQVLVDIRGKLIPAKVGKPRFI 354          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_THET8 (Aminomethyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.319e-13
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTK 404
            AG  LYG+++ +   P+     W + K    E  FLG E +L Q       R VG    GG P   +  +    G P+G +TSGG+SP L++ IA+ YV+ G   A    ++EVRG+A    ++ +PFVP K
Sbjct:  230 AGFPLYGHELTEETNPLCTPWAWVVKK----EKAFLGKEAMLAQACRE---RLVGLVLEGGIPREGYRVLSG--GRPVGRVTSGGYSPLLQRGIALAYVEEG---AEGPFQVEVRGRAVPAALSPLPFVPLK 349          
The following BLAST results are available for this feature:
BLAST of CN189291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
GCST_GEOSW1.283e-1333.86Aminomethyltransferase OS=Geobacillus sp. (strain ... [more]
GCST_DESHY1.676e-1337.04Aminomethyltransferase OS=Desulfitobacterium hafni... [more]
GCST_DESHD1.676e-1337.04Aminomethyltransferase OS=Desulfitobacterium hafni... [more]
GCST_BACV82.189e-1337.21Aminomethyltransferase OS=Bacteroides vulgatus (st... [more]
GCST_PROA22.859e-1335.94Aminomethyltransferase OS=Prosthecochloris aestuar... [more]
GCST_ANOFW2.859e-1333.86Aminomethyltransferase OS=Anoxybacillus flavitherm... [more]
GCST_SYMTH4.877e-1332.56Aminomethyltransferase OS=Symbiobacterium thermoph... [more]
GCST_NITEU4.877e-1338.35Aminomethyltransferase OS=Nitrosomonas europaea GN... [more]
GCST_LEGPL4.877e-1333.59Aminomethyltransferase OS=Legionella pneumophila (... [more]
GCST_THET88.319e-1335.61Aminomethyltransferase OS=Thermus thermophilus (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189291 ID=CN189291; Name=CN189291; organism=Citrus sinensis; type=EST; length=589bp
CTCCGACTTAAGCTGGCTTATGTTTATATGGTAATGACATGGAACAACAC
GTGACACCTGTAGAAGCTGGACTGACATGGGCCATAGGAAAGAGGAGGAG
AGCAGAAGGTGGCTTTCTAGGTGCTGAGAAAATACTCAAACAACTTGACG
AAGGTCCGCCAGTCAGACGTGTTGGATTCTTCGCTGGAGGTCCGCCTGCC
AGATCACACAGTAAGGTTCACGATGAGCAAGGGAATCCCATTGGAGAAAT
TACCAGTGGAGGATTCAGCCCCTGCCTCAAGAAGAATATAGCCATGGGAT
ATGTAAAATCTGGATTGCACAAGGCAGGCACAAAAGTTAAGATTGAGGTT
CGAGGAAAAGCCTACGATGGAAACATCACTAAAATGCCATTTGTGCCAAC
AAAATACTACAAGCCGTCTTAGTACATCTTTGTTGGTTCTGCTTATGGAA
GCTCTACTCGATTCCTGTTTTGACTTGTTTCATAAACATTGACTGCTCGA
GATTACTGTCTTTATTGCTAGCAGTTCTTTAATTCTGCAAATTCTTATGA
TTCTTGTTGCCTGAATAAAAGTGTTTACTTTAAAGCCCT
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