CN189291

Overview
NameCN189291
Unique NameCN189291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:1052..1637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_NITOC (Aminomethyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.319e-13
Identity = 46/129 (35.66%), Postives = 70/129 (54.26%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPP-ARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            AG+CLYG DM++  TP+E+GL W +   +  E  F+G   +  Q   G P ++VG    G    R+   +    G   G +TSGGFSP L+++IA+  V  G   A    ++++RG+A    + K PFV
Sbjct:  231 AGMCLYGADMDETTTPLESGLGWTVA-WKPPERDFIGRAVLEAQQAAGCPHQQVGLLLQGKGLMRNGQTITTNLGE--GVVTSGGFSPSLERSIALARVPVG---ADGPCEVQIRGRAVPAAMVKPPFV 353          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_CORA7 (Aminomethyltransferase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.319e-13
Identity = 46/130 (35.38%), Postives = 78/130 (60.00%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAG-GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYV--KSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            AG+ LYGN++ + +TPVEAG++ A  K+   E  F+GAE + ++ +EGP     G  +     AR+ S+V+  + N +G +TSG  SP L   +A+  +   +GL + G  V++++RGK Y   ++ +PF
Sbjct:  241 AGMPLYGNELTRDITPVEAGMSRAFAKK---EQDFVGAEVLRQRAEEGPQAVITGLVSSQRRAARAGSEVYVGE-NKVGTVTSGQPSPTLGHPVALALIDTAAGL-EPGAAVEVDIRGKRYPFEVSALPF 365          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_SYNP6 (Aminomethyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.087e-12
Identity = 41/127 (32.28%), Postives = 63/127 (49.61%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A + LYG++++    P+EAGL W +   R  +  FLG +++++    G   R VG    G     H          +G +TSG +SP L K IA+ YV   L   G ++ +E+RGK     + K PF
Sbjct:  241 AAMPLYGHELDTDTNPLEAGLGWVVHLDRNPD--FLGRDRLVQAKTNGLERRLVGLELPGRNIARHGYPVAIADTTVGIVTSGSWSPTLSKAIALAYVPPALANLGQELWVEIRGKQVPATVVKRPF 365          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_SYNE7 (Aminomethyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.087e-12
Identity = 41/127 (32.28%), Postives = 63/127 (49.61%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A + LYG++++    P+EAGL W +   R  +  FLG +++++    G   R VG    G     H          +G +TSG +SP L K IA+ YV   L   G ++ +E+RGK     + K PF
Sbjct:  241 AAMPLYGHELDTDTNPLEAGLGWVVHLDRNPD--FLGRDRLVQAKTNGLERRLVGLELPGRNIARHGYPVAIADTTVGIVTSGSWSPTLSKAIALAYVPPALANLGQELWVEIRGKQVPATVVKRPF 365          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_PROMT (Aminomethyltransferase OS=Prochlorococcus marinus (strain NATL2A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.087e-12
Identity = 43/129 (33.33%), Postives = 69/129 (53.49%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A + LYGND+    TP EAGL W +         F+G + + KQ + G   + VG      G   + +  +++ +   +G +TSG +SP L+K IA+ YV S + K  T++++E+R K +   I K PF
Sbjct:  243 ASMHLYGNDINLDTTPFEAGLGWLV--HLEMPNDFIGRKALEKQAEVGTQKKLVGIQVLDKGIARKGYPVLYNSE--TVGIVTSGTWSPTLQKPIALAYVPSEIAKVNTQIEVEIRRKKHPAIIVKRPF 367          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_HERA2 (Aminomethyltransferase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.087e-12
Identity = 46/134 (34.33%), Postives = 68/134 (50.75%), Query Frame = 3
Query:   15 GLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 413
            GL LYG+++E+ + P EA L W +   +  +G F+G+E +      GP    VG    G   AR    V    G+ +G +T+G  SP L KN+A   VK+G  K G +V + +R K     + K PF   +Y K
Sbjct:  231 GLALYGHEIERDINPYEAKLGWVV---KLDKGPFIGSEALHDIKANGPVRTLVGLEMTGRGIARQGYPVVALDGSELGVVTTGMPSPSLGKNLAYALVKAGSLKIGAEVDVLIREKPVRATVVKTPFYKARYKK 361          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_DESRM (Aminomethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.087e-12
Identity = 46/129 (35.66%), Postives = 70/129 (54.26%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A L LYG+++   ++P+ AGL W + K  + E  F+G E +LKQ + G   + VG      G P + ++    ++G  +G ITSG F+P L KN+ +GYV+      G ++ I VR K     I K PF
Sbjct:  236 ACLALYGHELTDDISPLMAGLGWTV-KFNKPE--FVGKEPLLKQKEAGTTYQLVGLEMIDRGIPRQGYAIF--KEGQEVGWITSGTFAPTLGKNMGLGYVEIPFADVGKELNIMVRNKPLKARIVKKPF 359          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_RALME (Aminomethyltransferase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.419e-12
Identity = 47/134 (35.07%), Postives = 72/134 (53.73%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAG------GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            AG+ LYG DM+ H +P++AGL+W +    ++E  F+G   +L    +         FAG      G   R+H KV    G+  GEITSG FSP L ++IA   +   +   GT+V++E+R +     + K+PFV
Sbjct:  246 AGMNLYGQDMDIHTSPLDAGLSWTVD--LQSERDFIGKSALLASGQQKT-------FAGLILRDKGGVLRAHQKVITPAGD--GEITSGTFSPSLSQSIAFARLPRDI-APGTEVQVEIRDRKLTATVVKLPFV 367          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_LEGPH (Aminomethyltransferase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gcvT PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.419e-12
Identity = 42/128 (32.81%), Postives = 68/128 (53.12%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            AG+ LYG DM++  TP+E+GL W + K    + GF+G   ++ Q  +G   + VG          H +    +G P G ITSG +SP L+++IA+  V     + G +V +++RGK     + K  F+
Sbjct:  231 AGMLLYGQDMDETTTPLESGLAWTV-KWEPEDRGFIGMGALVSQKQQGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPM---ETGEQVLVDIRGKLIPAKVGKPRFI 354          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_THET2 (Aminomethyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.853e-12
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTK 404
            AG  LYG+++ +   P+     W + K    E  FLG E +L Q       R VG    GG P   +  +    G P+G +TSGG+SP L++ IA+ YV+ G   A    ++EVRG+A    ++ +PFVP K
Sbjct:  230 AGFPLYGHELTEETNPLCTPWAWVVKK----EKAFLGKEAMLAQACRE---RLVGLVLEGGIPREGYRVLSG--GCPVGRVTSGGYSPLLQRGIALAYVEEG---AEGPFQVEVRGRAVPAALSPLPFVPLK 349          
The following BLAST results are available for this feature:
BLAST of CN189291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
GCST_NITOC8.319e-1335.66Aminomethyltransferase OS=Nitrosococcus oceani (st... [more]
GCST_CORA78.319e-1335.38Aminomethyltransferase OS=Corynebacterium aurimuco... [more]
GCST_SYNP61.087e-1232.28Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_SYNE71.087e-1232.28Aminomethyltransferase OS=Synechococcus elongatus ... [more]
GCST_PROMT1.087e-1233.33Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_HERA21.087e-1234.33Aminomethyltransferase OS=Herpetosiphon aurantiacu... [more]
GCST_DESRM1.087e-1235.66Aminomethyltransferase OS=Desulfotomaculum reducen... [more]
GCST_RALME1.419e-1235.07Aminomethyltransferase OS=Ralstonia metallidurans ... [more]
GCST_LEGPH1.419e-1232.81Aminomethyltransferase OS=Legionella pneumophila s... [more]
GCST_THET21.853e-1235.61Aminomethyltransferase OS=Thermus thermophilus (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189291 ID=CN189291; Name=CN189291; organism=Citrus sinensis; type=EST; length=589bp
CTCCGACTTAAGCTGGCTTATGTTTATATGGTAATGACATGGAACAACAC
GTGACACCTGTAGAAGCTGGACTGACATGGGCCATAGGAAAGAGGAGGAG
AGCAGAAGGTGGCTTTCTAGGTGCTGAGAAAATACTCAAACAACTTGACG
AAGGTCCGCCAGTCAGACGTGTTGGATTCTTCGCTGGAGGTCCGCCTGCC
AGATCACACAGTAAGGTTCACGATGAGCAAGGGAATCCCATTGGAGAAAT
TACCAGTGGAGGATTCAGCCCCTGCCTCAAGAAGAATATAGCCATGGGAT
ATGTAAAATCTGGATTGCACAAGGCAGGCACAAAAGTTAAGATTGAGGTT
CGAGGAAAAGCCTACGATGGAAACATCACTAAAATGCCATTTGTGCCAAC
AAAATACTACAAGCCGTCTTAGTACATCTTTGTTGGTTCTGCTTATGGAA
GCTCTACTCGATTCCTGTTTTGACTTGTTTCATAAACATTGACTGCTCGA
GATTACTGTCTTTATTGCTAGCAGTTCTTTAATTCTGCAAATTCTTATGA
TTCTTGTTGCCTGAATAAAAGTGTTTACTTTAAAGCCCT
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