CN189291

Overview
NameCN189291
Unique NameCN189291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:1052..1637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_LEGPC (Aminomethyltransferase OS=Legionella pneumophila (strain Corby) GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.853e-12
Identity = 42/128 (32.81%), Postives = 68/128 (53.12%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            AG+ LYG DM++  TP+E+GL W + K    + GF+G   ++ Q  +G   + VG          H +    +G P G ITSG +SP L+++IA+  V     + G +V +++RGK     + K  F+
Sbjct:  231 AGMLLYGQDMDETTTPLESGLAWTV-KWEPEDRGFIGMGALVSQKQQGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPV---ETGEQVLVDIRGKLIPAKVGKPRFI 354          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_GEOTN (Aminomethyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.853e-12
Identity = 46/134 (34.33%), Postives = 69/134 (51.49%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 413
            A L LYG ++   ++P+EAGL +A+  +   E  F+G   + +Q + GPP R VG          H       G   G +T+G  SP LKKNI +  VK+ +   G +V++++RGK       K   VPT +YK
Sbjct:  235 ACLPLYGQELSATISPLEAGLGFAV--KTEKEPPFIGQAVLKQQKEAGPPRRLVGIEMIDKGIPRHGYRVFAAGEEAGFVTTGTQSPTLKKNIGLALVKAEVAAIGQEVEVDIRGKR-----LKATIVPTPFYK 361          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_DECAR (Aminomethyltransferase OS=Dechloromonas aromatica (strain RCB) GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.853e-12
Identity = 44/127 (34.65%), Postives = 73/127 (57.48%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            AG+ LYG DM++ V+P++AGL W +      +  F+G   ++    +   +  +    G    R H KV  +QG+  GEITSG FSP L+++IA+  +  G+ + G +V++++RGKA    +TK  F
Sbjct:  236 AGMNLYGQDMDETVSPLDAGLAWTVS--LNTDRDFVGKAALVTNGQQKQFLGLILLDKG--VLRGHQKVMTKQGD--GEITSGSFSPTLQQSIALARLPLGV-QIGDEVEVDIRGKALKAKVTKPVF 355          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_BURP8 (Aminomethyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.853e-12
Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKI----LKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            AG+ LYG DM+  V+P++AGL W +      E  F+G  K+     KQ   G  + +    A G   R+H KV    G   GEITSG FSP ++++IA   V  G+ + G  V +++R KA   ++ K+PFV
Sbjct:  239 AGMNLYGQDMDDDVSPLDAGLAWTVDLSAPRE--FIGRAKLEADGSKQSFVGLILHKDNGKAAG-VLRAHQKVVTPNGE--GEITSGTFSPTMQESIAFARVPKGV-QPGDVVHVQIRDKALPASVVKLPFV 364          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_FRAAA (Aminomethyltransferase OS=Frankia alni (strain ACN14a) GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.421e-12
Identity = 44/130 (33.85%), Postives = 67/130 (51.54%), Query Frame = 3
Query:   15 GLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPA-RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPT 401
            G  L+G D+   +TPV+A   WA+G  +     F G E +L +   GP     G  + G    R H  V    G P+GE+TSG FSP L++ I +  +  G+ + G  V ++VRG+     + + PFVP+
Sbjct:  237 GYPLHGQDLSPTITPVQARSGWAVGWGKER---FWGREALLAERAAGPARLLWGLASTGRAIPRPHMPVTAADGAPVGEVTSGTFSPTLRQGIGLALLDRGVAE-GDTVNVDVRGRPGPMTVVRPPFVPS 362          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_BACSK (Aminomethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.421e-12
Identity = 42/129 (32.56%), Postives = 71/129 (55.04%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A L LYG ++ + ++P+EAG+ +A+   ++A   F+G + + KQ ++GP  + VG      G P   +   +  QG  +G +TSG  SP L KN+ +   K+      T++++EVRGK     + K PF
Sbjct:  238 ARLPLYGQELTKDISPIEAGIGFAVKTDKQA--AFIGQQALKKQKEQGPSRKLVGIEMVDRGIPRTGYRVFY--QGQDVGFVTSGTQSPTLGKNVGLVLAKADAAAIDTELEVEVRGKRLRARVVKTPF 362          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_LEGPA (Aminomethyltransferase OS=Legionella pneumophila (strain Paris) GN=gcvT PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.161e-12
Identity = 42/128 (32.81%), Postives = 67/128 (52.34%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            AG+ LYG DM++  TP+E+GL W + K    + GF+G   +  Q  +G   + VG          H +    +G P G ITSG +SP L+++IA+  V     + G +V +++RGK     + K  F+
Sbjct:  231 AGMLLYGQDMDETTTPLESGLAWTV-KWEPEDRGFIGMGALASQKQQGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPV---ETGEQVLVDIRGKLIPAKVGKPRFI 354          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_THELT (Aminomethyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=gcvT PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-12
Identity = 39/127 (30.71%), Postives = 66/127 (51.97%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            A   LYGNDM++  TP+E GL+W +    + +  F+G + ++KQ + G   R  G          H     +    +G +TSG FSP L+K +A+  + S + K   ++++++RG      I K+PF
Sbjct:  233 ASYMLYGNDMDETTTPLEVGLSWVV----KFDKDFIGKDSLIKQKELGLQKRIRGLEISDRRIARHGMYVFKGEKRVGVVTSGTFSPTLEKPVALAMLSSEI-KISDEIEVDIRGSKVKAMIVKLPF 354          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_RALPJ (Aminomethyltransferase OS=Ralstonia pickettii (strain 12J) GN=gcvT PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-12
Identity = 47/130 (36.15%), Postives = 70/130 (53.85%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA--GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 395
            AG+ LYG DM++HV+P++AGL W +    ++E  F G   +      G   + VG      G   R+H KV    G+  GEITSG FSP L  +IA+  +   +   GT V++E+R +     + K+PFV
Sbjct:  246 AGMNLYGQDMDEHVSPLDAGLAWTVD--LQSERDFTGKAALQA---GGQREQFVGLILRDKGGVLRAHQKVITAAGD--GEITSGTFSPSLSLSIALARLPKEV-PVGTDVQVEIRDRKLTATVVKLPFV 367          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_PROMP (Aminomethyltransferase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-12
Identity = 45/127 (35.43%), Postives = 61/127 (48.03%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 392
            AG+ LYG D+ +  TP EAGL W +      +  F G E + KQ   G   + VG    G           + G  IG ITSG +SP  +K IA  Y+++        V+I +RGK + G ITK  F
Sbjct:  241 AGMHLYGQDLNETTTPYEAGLGWLVHLENNHD--FFGREFLEKQSRFGINKKLVGLNIEGRAIGRKGCEVFKDGENIGTITSGSWSPTKQKAIAFAYIQNSYATLNNVVEILIRGKTFKGTITKRAF 365          
The following BLAST results are available for this feature:
BLAST of CN189291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
GCST_LEGPC1.853e-1232.81Aminomethyltransferase OS=Legionella pneumophila (... [more]
GCST_GEOTN1.853e-1234.33Aminomethyltransferase OS=Geobacillus thermodenitr... [more]
GCST_DECAR1.853e-1234.65Aminomethyltransferase OS=Dechloromonas aromatica ... [more]
GCST_BURP81.853e-1237.12Aminomethyltransferase OS=Burkholderia phymatum (s... [more]
GCST_FRAAA2.421e-1233.85Aminomethyltransferase OS=Frankia alni (strain ACN... [more]
GCST_BACSK2.421e-1232.56Aminomethyltransferase OS=Bacillus clausii (strain... [more]
GCST_LEGPA3.161e-1232.81Aminomethyltransferase OS=Legionella pneumophila (... [more]
GCST_THELT4.129e-1230.71Aminomethyltransferase OS=Thermotoga lettingae (st... [more]
GCST_RALPJ4.129e-1236.15Aminomethyltransferase OS=Ralstonia pickettii (str... [more]
GCST_PROMP4.129e-1235.43Aminomethyltransferase OS=Prochlorococcus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189291 ID=CN189291; Name=CN189291; organism=Citrus sinensis; type=EST; length=589bp
CTCCGACTTAAGCTGGCTTATGTTTATATGGTAATGACATGGAACAACAC
GTGACACCTGTAGAAGCTGGACTGACATGGGCCATAGGAAAGAGGAGGAG
AGCAGAAGGTGGCTTTCTAGGTGCTGAGAAAATACTCAAACAACTTGACG
AAGGTCCGCCAGTCAGACGTGTTGGATTCTTCGCTGGAGGTCCGCCTGCC
AGATCACACAGTAAGGTTCACGATGAGCAAGGGAATCCCATTGGAGAAAT
TACCAGTGGAGGATTCAGCCCCTGCCTCAAGAAGAATATAGCCATGGGAT
ATGTAAAATCTGGATTGCACAAGGCAGGCACAAAAGTTAAGATTGAGGTT
CGAGGAAAAGCCTACGATGGAAACATCACTAAAATGCCATTTGTGCCAAC
AAAATACTACAAGCCGTCTTAGTACATCTTTGTTGGTTCTGCTTATGGAA
GCTCTACTCGATTCCTGTTTTGACTTGTTTCATAAACATTGACTGCTCGA
GATTACTGTCTTTATTGCTAGCAGTTCTTTAATTCTGCAAATTCTTATGA
TTCTTGTTGCCTGAATAAAAGTGTTTACTTTAAAGCCCT
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