CN189284

Overview
NameCN189284
Unique NameCN189284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2721 contig Csv1_Contig2721:1..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189284 vs. ExPASy Swiss-Prot
Match: REEP4_HUMAN (Receptor expression-enhancing protein 4 OS=Homo sapiens GN=REEP4 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 35/100 (35.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  202 IVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLD 501
            ++ R      G + P Y+++KA+++K+  E  +W++YW V+  F  AE+  D  + WFP Y+ +K AF++WL  P T GA   Y   + P L RH+  +D
Sbjct:    5 MICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFISWFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEID 104          
BLAST of CN189284 vs. ExPASy Swiss-Prot
Match: REEP6_RAT (Receptor expression-enhancing protein 6 OS=Rattus norvegicus GN=Reep6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  220 CCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPST-NGAKYFYMSRLRPFLLRHQARLDQILESVNG 525
            C  +G + P Y++ KAIES ++ +   WL YW VY  F + E F+D +L WFP Y+  K AFL++   P   NGA   Y   +RP  L+H   LD     ++G
Sbjct:   58 CNVIGFVYPAYASVKAIESPNKEDDTVWLTYWVVYALFGLVEFFSDLLLFWFPFYYAGKCAFLLFCMTPGPWNGALLLYHRVIRPLFLKHHVALDSAASQLSG 160          
BLAST of CN189284 vs. ExPASy Swiss-Prot
Match: REEP3_MOUSE (Receptor expression-enhancing protein 3 OS=Mus musculus GN=Reep3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 35/103 (33.98%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  202 IVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQIL 510
            ++ R      G + P Y ++KA+++K+  E  +W++YW V+  +++ E  AD+ L WFPLY+ +K AF++WL  P T GA   Y   L P L   +  +D  +
Sbjct:    5 MISRAVVLVFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTLAWFPLYYELKIAFVIWLLSPYTRGASLIYRKFLHPLLSSKEREIDDYI 107          
BLAST of CN189284 vs. ExPASy Swiss-Prot
Match: REEP6_MOUSE (Receptor expression-enhancing protein 6 OS=Mus musculus GN=Reep6 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  220 CCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPST-NGAKYFYMSRLRPFLLRHQARLDQILESVNG 525
            C  +G + P Y++ KAIES  + +   WL YW VY  F + E F+D +L WFP Y+  K AFL++   P   NGA   Y   +RP  L+H   LD     ++G
Sbjct:   58 CNVIGFVYPAYASVKAIESPSKEDDTVWLTYWVVYALFGLVEFFSDLLLFWFPFYYAGKCAFLLFCMTPGPWNGALLLYHRVIRPLFLKHHMALDSAASQLSG 160          
BLAST of CN189284 vs. ExPASy Swiss-Prot
Match: REEP3_HUMAN (Receptor expression-enhancing protein 3 OS=Homo sapiens GN=REEP3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 34/103 (33.01%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  202 IVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQIL 510
            ++ R      G + P Y ++KA+++K+  E  +W++YW V+  +++ E  AD+ + WFPLY+ +K AF++WL  P T GA   Y   L P L   +  +D  +
Sbjct:    5 MISRAVVLVFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTVAWFPLYYELKIAFVIWLLSPYTKGASLIYRKFLHPLLSSKEREIDDYI 107          
BLAST of CN189284 vs. ExPASy Swiss-Prot
Match: HA22B_ARATH (HVA22-like protein b OS=Arabidopsis thaliana GN=HVA22B PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  229 VGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLL 480
            +  + P+Y++ +AIES+   + ++WL YWA+Y    + E+   ++L W PLY + K A   WL LP  NGA Y Y   +R FLL
Sbjct:   24 ISLVYPLYASVRAIESRSHGDDKQWLTYWALYSLIKLFELTFFRLLEWIPLYPYAKLALTSWLVLPGMNGAAYLYEHYVRSFLL 107          
BLAST of CN189284 vs. ExPASy Swiss-Prot
Match: YOP1_USTMA (Protein YOP1 OS=Ustilago maydis GN=YOP1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = 1
Query:  229 VGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQ 504
            +G  +P Y + KA+ES    +  +WL YW V+G F+  E F + +L + P Y+ +K   +VWL LP T GAK  Y   +RP  L  Q  + Q
Sbjct:   68 LGFFVPAYFSLKALESPQPQDDIQWLTYWVVFGLFTFLETFINIVLYYIPWYYTIKTLAIVWLMLPQTQGAKMVYSRIIRPVFLTTQKTVHQ 159          
BLAST of CN189284 vs. ExPASy Swiss-Prot
Match: YOP1_CRYNE (Protein YOP1 OS=Cryptococcus neoformans GN=YOP1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.513e-13
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  229 VGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAE-MFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFL 477
            +G  LP Y +  AIES   N+ ++WL YW V+GS ++ E M    +L W P+Y   K  F +WL LP+T GA+  Y   LRP +
Sbjct:   83 IGWALPAYLSILAIESPQTNDDKQWLTYWVVFGSLNLVESMGLRAVLYWVPMYFVFKTLFTIWLMLPATRGAEILYFHFLRPMV 166          
BLAST of CN189284 vs. ExPASy Swiss-Prot
Match: HA22C_ARATH (HVA22-like protein c OS=Arabidopsis thaliana GN=HVA22C PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = 1
Query:  229 VGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPF 474
            V  + P+Y++ KAIE++   E ++WL YW +Y   S+ E+   K L WFP++ ++K   + WL LP  NGA++ Y   +RPF
Sbjct:   26 VTLVYPLYASVKAIETRSLPEDEQWLTYWVLYALISLFELTFSKPLEWFPIWPYMKLFGICWLVLPQFNGAEHIYKHFIRPF 107          
BLAST of CN189284 vs. ExPASy Swiss-Prot
Match: YOP1_DEBHA (Protein YOP1 OS=Debaryomyces hansenii GN=YOP1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 37/125 (29.60%), Postives = 65/125 (52.00%), Query Frame = 1
Query:  148 ALSGEVGLRLLLCPIGSNIVVRTACCSVGTILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRHQARLDQILESVN 522
            A+ G  GL  +L  +    V +      G ++P Y +  A+ES   ++  + L YW V+ +F++ E ++  IL W P Y+  K  FLV++ +PST GA   Y + ++PF  R+     +  + +N
Sbjct:   38 AILGGFGLYFVLIFLNIGGVGQLLSNIAGLVIPGYFSLLALESTTTSDDTQLLTYWVVFATFNVVEFWSKAILYWIPFYYLFKTVFLVYIGIPSTGGAVTVYNAAIKPFSRRYIVNNKKFAQDIN 162          
The following BLAST results are available for this feature:
BLAST of CN189284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
REEP4_HUMAN6.565e-1735.00Receptor expression-enhancing protein 4 OS=Homo sa... [more]
REEP6_RAT8.574e-1738.83Receptor expression-enhancing protein 6 OS=Rattus ... [more]
REEP3_MOUSE8.574e-1733.98Receptor expression-enhancing protein 3 OS=Mus mus... [more]
REEP6_MOUSE1.463e-1638.83Receptor expression-enhancing protein 6 OS=Mus mus... [more]
REEP3_HUMAN1.910e-1633.01Receptor expression-enhancing protein 3 OS=Homo sa... [more]
HA22B_ARATH3.983e-1439.29HVA22-like protein b OS=Arabidopsis thaliana GN=HV... [more]
YOP1_USTMA8.873e-1438.04Protein YOP1 OS=Ustilago maydis GN=YOP1 PE=3 SV=1[more]
YOP1_CRYNE1.513e-1341.67Protein YOP1 OS=Cryptococcus neoformans GN=YOP1 PE... [more]
HA22C_ARATH4.404e-1339.02HVA22-like protein c OS=Arabidopsis thaliana GN=HV... [more]
YOP1_DEBHA9.810e-1329.60Protein YOP1 OS=Debaryomyces hansenii GN=YOP1 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189284 ID=CN189284; Name=CN189284; organism=Citrus sinensis; type=EST; length=735bp
AGGCACAACCCCGGTCGGGTGAAATTGAACCCGGTTCAAATTTCCACCCT
TGCGCATTGCGATCCGATCTCGACAAATGGCAACAATCAATCGCGGCCTT
CAAATCAAATCTTTTTGCTTCGCAGTTTTCTGCGTATTGAATTAATGGCT
CTCTCAGGCGAGGTTGGTTTGCGATTGCTTCTTTGCCCAATTGGCTCTAA
CATTGTTGTCCGCACAGCATGTTGTTCGGTTGGGACGATTTTGCCGGTTT
ACTCGACTTTTAAAGCTATTGAGAGCAAAGATGAAAATGAGAAACAAAAG
TGGCTTGTTTATTGGGCTGTTTATGGATCTTTTAGCATTGCGGAAATGTT
TGCTGACAAGATACTCTGCTGGTTTCCGCTTTACCACCATGTGAAGTTTG
CATTTCTGGTTTGGCTACAACTTCCATCTACCAATGGAGCGAAATATTTT
TATATGAGTCGTTTGCGCCCATTTCTATTGAGACATCAAGCTAGACTTGA
TCAAATACTGGAGTCTGTAAATGGTGAAATGAGTCAATTTGTCAGTGATC
ATCAAGTTGAATTCCGGTTTGTGAGGACGCTCTTTATGAAAACTGTGGCA
TTAGTGAACCAAACTGTTAAGGAGATTATTCATCCTGTGCCAACACAAGC
AAATCGAGCTATTGAAGGCCCACCAGAATCAATTCCAGATTCTCAGTCAG
ACAACGAAGACTGACAAATAGTTCCTAACAAGCAC
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