CN189284

Overview
NameCN189284
Unique NameCN189284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189284 vs. ExPASy Swiss-Prot
Match: HA22D_ARATH (HVA22-like protein d OS=Arabidopsis thaliana GN=HVA22D PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 26/83 (31.33%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:  238 ILPVYSTFKAIESKDENEKQKWLVYWAVYGSFSIAEMFADKILCWFPLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRPFLLRH 486
            + P+Y++  A+ES  + + ++WL YW +Y   S+ E+    ++ W P+++ VK  F+ WL LP   GA + Y   +R    +H
Sbjct:   22 LYPLYASVIAMESTTKVDDEQWLAYWIIYSFLSLTELILQSLIEWIPIWYTVKLVFVAWLVLPQFQGAAFIYNRVVREQFKKH 104
The following BLAST results are available for this feature:
BLAST of CN189284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
HA22D_ARATH9.182e-1131.33HVA22-like protein d OS=Arabidopsis thaliana GN=HV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189284 ID=CN189284; Name=CN189284; organism=Citrus sinensis; type=EST; length=735bp
AGGCACAACCCCGGTCGGGTGAAATTGAACCCGGTTCAAATTTCCACCCT
TGCGCATTGCGATCCGATCTCGACAAATGGCAACAATCAATCGCGGCCTT
CAAATCAAATCTTTTTGCTTCGCAGTTTTCTGCGTATTGAATTAATGGCT
CTCTCAGGCGAGGTTGGTTTGCGATTGCTTCTTTGCCCAATTGGCTCTAA
CATTGTTGTCCGCACAGCATGTTGTTCGGTTGGGACGATTTTGCCGGTTT
ACTCGACTTTTAAAGCTATTGAGAGCAAAGATGAAAATGAGAAACAAAAG
TGGCTTGTTTATTGGGCTGTTTATGGATCTTTTAGCATTGCGGAAATGTT
TGCTGACAAGATACTCTGCTGGTTTCCGCTTTACCACCATGTGAAGTTTG
CATTTCTGGTTTGGCTACAACTTCCATCTACCAATGGAGCGAAATATTTT
TATATGAGTCGTTTGCGCCCATTTCTATTGAGACATCAAGCTAGACTTGA
TCAAATACTGGAGTCTGTAAATGGTGAAATGAGTCAATTTGTCAGTGATC
ATCAAGTTGAATTCCGGTTTGTGAGGACGCTCTTTATGAAAACTGTGGCA
TTAGTGAACCAAACTGTTAAGGAGATTATTCATCCTGTGCCAACACAAGC
AAATCGAGCTATTGAAGGCCCACCAGAATCAATTCCAGATTCTCAGTCAG
ACAACGAAGACTGACAAATAGTTCCTAACAAGCAC
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