CN189281

Overview
NameCN189281
Unique NameCN189281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDH_MYCBO (Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis GN=icd PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.597e-18
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = -1
Query:  250 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 498
            TN IASIF W+RGL HR KLD    ++DF  KLE+  + TVESGKMTKDLA++I       + +LN+EEF+DA+A++L   L+
Sbjct:  330 TNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLESVVIATVESGKMTKDLAILIG----PEQDWLNSEEFLDAIADNLEKELA 408          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.597e-18
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = -1
Query:  265 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVANDL 498
            TN IASIF W+RGL HR KLD N  L+ F + LE  CV TVESG MTKDLA  IHG    +  EH+LNT +F+D + ++L
Sbjct:  335 TNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 414          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 4.597e-18
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = -1
Query:  265 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVANDL 498
            TN IASIF W+RGL HR KLD N  L+ F + LE  CV TVESG MTKDLA  IHG    +  EH+LNT +F+D + ++L
Sbjct:  366 TNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 445          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.004e-18
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = -1
Query:  265 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVANDL 498
            TN IASIF W+RGL HR KLD N  L+ F + LE  CV TVESG MTKDLA  IHG    +  EH+LNT +F+D + ++L
Sbjct:  366 TNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVQTVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 6.004e-18
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = -1
Query:  265 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVANDL 498
            TN IASIF W+RGL HR KLD N  L+ F + LE  CV TVESG MTKDLA  IHG    +  EH+LNT +F+D + ++L
Sbjct:  366 TNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVQTVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.004e-18
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = -1
Query:  265 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVANDL 498
            TN IASIF W+RGL HR KLD N  L+ F + LE  CV TVESG MTKDLA  IHG    +  EH+LNT +F+D + ++L
Sbjct:  366 TNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.004e-18
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = -1
Query:  265 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVANDL 498
            TN IASIF W+RGL HR KLD N  L+ F + LE  CV TVESG MTKDLA  IHG    +  EH+LNT +F+D + ++L
Sbjct:  366 TNPIASIFAWTRGLEHRGKLDGNQDLIRFAQMLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHP_DICDI (Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium discoideum GN=idhM PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.842e-18
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = -1
Query:  274 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVA 498
            TNS+ASIF W+  L  R KLDNN  L+ F + +E ACV ++ESG MTKDLA+ I G+++ R +YLNTEE+I+ VA
Sbjct:  347 TNSVASIFAWTSALGQRGKLDNNKDLVKFAQDMEKACVESIESGFMTKDLAICIKGNQVKRSNYLNTEEYINKVA 421          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHC_SHEEP (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.842e-18
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = -1
Query:  250 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 498
            TN IASIF W+RGLAHRAKLDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+ +L+
Sbjct:  327 TNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLQLKLA 410          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHC_BOVIN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.842e-18
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = -1
Query:  250 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 498
            TN IASIF W+RGLAHRAKLDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+ +L+
Sbjct:  327 TNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLQLKLA 410          
The following BLAST results are available for this feature:
BLAST of CN189281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDH_MYCBO4.597e-1853.01Isocitrate dehydrogenase [NADP] OS=Mycobacterium b... [more]
IDHP_PIG4.597e-1856.25Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_BOVIN4.597e-1856.25Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_RAT6.004e-1856.25Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MOUSE6.004e-1856.25Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MACFA6.004e-1856.25Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_HUMAN6.004e-1856.25Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_DICDI7.842e-1856.00Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_SHEEP7.842e-1854.76Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovi... [more]
IDHC_BOVIN7.842e-1854.76Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189281 ID=CN189281; Name=CN189281; organism=Citrus sinensis; type=EST; length=498bp
TTTTTTTTTTTTTTTGGCGCAATAGTTTTGTTTAAACAAGCCATGTTCAA
GACATTTGCTTGCATGAAAATGAGAGTTTGTCGATCAACAGGAAAGCAGT
CTATTGTAGGAATTAGAAGAGAACCAAATCCCAATCCCCAATTTTCCCCT
CTTCAATTATTTCTTCTCAGCATAATATGAAAAAGATAACCAAAGGAAGC
TTCCCCAAGTCTTTACCTTTGAATGTGTAGCATAAAATCATGCTTTGCCA
GAGAGTCTTGCTCTTAGATCGTTGGCCACAGCATCAATGAACTCTTCAGT
ATTCAGATAGTGTTCCCTAGTCATCTTAGATCCATGGATAATAAGTGCAA
GATCCTTGGTCATCTTCCCAGATTCAACAGTGCCAACACATGCAGCTTCT
AGTTTCTCAGGGAAATCCAATAGCCTAGCATTGTTGTCCAACTTCGCCCT
ATGTGCAAGCCCTCGTGACCAAACAAAGATGGAGGCTATGCTGTTTGT
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