CN189273

Overview
NameCN189273
Unique NameCN189273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.968e-19
Identity = 57/170 (33.53%), Postives = 85/170 (50.00%), Query Frame = 2
Query:  194 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGN---HKLTADVL--------PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYI 670
            +  F +++ K Y + ++    F  F +NL  + + N        G+NKF+D     F     G   N   +T  N   ++L   V         PE+ DWR+   V+ VK+QG CGSCW F+  G++E+ Y       I LSEQQL+DC +   +QGC+GGL   AF+ I
Sbjct:   33 YENFIKQHNKEYTTPDQRDAAFVNFKRNLADMNAMNNVSNQAVYGINKFSDIDKITFVNEHAGLVSNLINSTDSNFDPYRLCEYVTVAGPSARTPESFDWRKLNKVTKVKEQGVCGSCWAFAAIGNIESQYAIMHDSLIDLSEQQLLDCDRV--DQGCDGGLMHLAFQEI 200          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.968e-19
Identity = 62/165 (37.58%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  194 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAA-----QN-CSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYI 670
            F  F  ++ K Y S  E   RF  F  NL+ I + N    + +  +NKFAD S +E      G +     QN C            D  P   DWR    V+ VK+QG CG+CW F+T GSLE+ +     + I+LSEQQL+DC   F + GC+GGL   AFE +
Sbjct:   28 FEDFLHKFNKSYSSESEKLRRFQIFRHNLEEIINKNHNDSTAQYEINKFADLSKDETISKYTGLSLPLQTQNFCEVVVLDR---PPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNQFINLSEQQLIDC--DFVDAGCDGGLLHTAFEAV 187          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATL1_PARTE (Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT00020990001 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.968e-19
Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = 2
Query:  194 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRS--TNRKGLSYRLGLNKFADWSWEEFQRHRLG-----AAQNCSATTKGNHKLTADVLPETKDWRESGIVS--PVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYI 670
            +A +  +Y + Y +  +   R+  F+ NL+ IR+   + +  ++ L LN+FAD S +EF +  L       A+  +A +   +K  A+V     DW ++  V    VK+QG CGSCW FS  G+LE        +   LSEQ LVDC+  ++N GCNGG    AFEY+
Sbjct:   26 YANWKMKYNRRYTNQRDEMYRYKVFTDNLNYIRAFYESPEEATFTLELNQFADMSQQEFAQTYLSLKVPRTAKLNAANSNFQYK-GAEV-----DWTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNRKYELSEQDLVDCSGPYDNDGCNGGWMDSAFEYV 187          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.795e-19
Identity = 59/171 (34.50%), Postives = 76/171 (44.44%), Query Frame = 2
Query:  194 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQN------------CSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYI 670
            F  F   Y K Y   +    RF  F +NL+ I   N+   S    +NKF+D S  E      G                C+           D LP+  DWR +  ++ VKDQG CGSCW  +  G+LE  Y       I+LSEQQL+DC  A  N  C+GGL   AFE +
Sbjct:   32 FETFIINYNKQYPDTKTKNYRFKIFKQNLEDINEKNKLNDSAIYNINKFSDLSKNELLTKYTGLTSKKPSNMVRSTSNFCNVIHLDAPPDVHDELPQNFDWRVNNKMTSVKDQGACGSCWAHAAVGTLETLYAIKHNYLINLSEQQLIDCDSA--NMACDGGLMHTAFEQL 200          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.018e-18
Identity = 61/165 (36.97%), Postives = 84/165 (50.91%), Query Frame = 2
Query:  194 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAA-----QN-CSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYI 670
            F  F  ++ K Y S  E   RF  F  NL+ I + N+   S +  +NKF+D S +E      G +     QN C            D  P   DWR    V+ VK+QG CG+CW F+T GSLE+ +     + I+LSEQQL+DC   F + GC+GGL   A+E +
Sbjct:   28 FEEFLHKFNKNYSSESEKLRRFKIFQHNLEEIINKNQNDTSAQYEINKFSDLSKDETISKYTGLSLPLQKQNFCEVVVLDR---PPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDC--DFVDVGCDGGLLHTAYEAV 187          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATV_NPVBM (Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 63/164 (38.41%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  194 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETK-----DWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYI 670
            F  F  R+ K Y S  E   RF  F  NL+ I + N+   S +  +NKF+D S +E      G +      T+   K+     P  K     DWR    V+ VK+QG CG+CW F+T GSLE+ +     + I+LSEQQ++DC   F + GCNGGL   AFE I
Sbjct:   28 FEEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIINKNQND-SAKYEINKFSDLSKDETIAKYTGLS--LPTQTQNFCKVILLDQPPGKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMIDC--DFVDAGCNGGLLHTAFEAI 186          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATK_RAT (Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 56/162 (34.57%), Postives = 84/162 (51.85%), Query Frame = 2
Query:  209 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGL----SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIK 673
            + +GK Y S  +   R   + KNL  I   N +      +Y L +N   D + EE  +   G     S +   +   T +    +P++ D+R+ G V+PVK+QG CGSCW FS+ G+LE    +  GK ++LS Q LVDC     N GC GG  + AF+Y++
Sbjct:   31 KTHGKQYNSKVDEISRRLIWEKNLKKISVHNLEASLGAHTYELAMNHLGDMTSEEVVQKMTGLRVPPSRSFSNDTLYTPEWEGRVPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVS--ENYGCGGGYMTTAFQYVQ 190          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.268e-18
Identity = 55/158 (34.81%), Postives = 81/158 (51.27%), Query Frame = 2
Query:  212 RYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLS----YRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIK 673
            ++GK Y +V E +LR A + KN  +I   N + L     + + +N F D +  EF +   G  +                +P+  DWR  G V+PVK+QG+C S W FS TGSLE    +  G+ + LSEQ L+DC  +     C+GG    AF+Y+K
Sbjct:   35 KHGKAY-NVNEERLRRAVWEKNFKMIELHNWEYLEGKHDFTMTMNAFGDLTNTEFVKMMTGFRRQKIKRMHVFQDHQFLYVPKYVDWRMLGYVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDCMGSNVTHDCSGGFMQNAFQYVK 191          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.268e-18
Identity = 61/164 (37.20%), Postives = 82/164 (50.00%), Query Frame = 2
Query:  194 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAA-----QNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYI 670
            F  F   + K Y S  E   RF  F  NL+ I + N    S +  +NKF+D S +E      G +     QN       N     D  P   DWR    V+ VK+QG CG+CW F+T GSLE+ +     + I+LSEQQL+DC   F + GC+GGL   A+E +
Sbjct:   28 FEDFLHNFNKNYSSKSEKLHRFKIFQHNLEEIINKNLNDTSAQYEINKFSDLSKDETISKYTGLSLPLQNQNFCEVVVLNRP--PDKGPLEFDWRRLNKVTSVKNQGTCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDC--DFVDMGCDGGLLHTAYEAV 187          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATK_CHICK (Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.268e-18
Identity = 51/123 (41.46%), Postives = 63/123 (51.22%), Query Frame = 2
Query:  314 SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIK 673
            S++L +N   D + EE  R   G     S           D     P   DWR  G V+PVKDQG CGSCW FS+ G+LE    +  GK +SLS Q LV C    NN GC GG  + AFEY++
Sbjct:   75 SFQLAMNYLGDMTSEEVVRTMTGLRVPRSRPRPNGTLYVPDWSSRAPAAVDWRRKGYVTPVKDQGQCGSCWAFSSVGALEGQLKRRTGKLLSLSPQNLVYCVS--NNNGCGGGYMTNAFEYVR 195          
The following BLAST results are available for this feature:
BLAST of CN189273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CATV_NPVST5.968e-1933.53Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
CATV_NPVCF5.968e-1937.58Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
CATL1_PARTE5.968e-1935.12Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CATV_NPVAH7.795e-1934.50Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
CATV_NPVAP1.018e-1836.97Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATV_NPVBM1.330e-1838.41Viral cathepsin OS=Bombyx mori nuclear polyhedrosi... [more]
CATK_RAT1.736e-1834.57Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1[more]
TEST2_MOUSE2.268e-1834.81Testin-2 OS=Mus musculus PE=2 SV=1[more]
CATV_NPVCD2.268e-1837.20Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CATK_CHICK2.268e-1841.46Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189273 ID=CN189273; Name=CN189273; organism=Citrus sinensis; type=EST; length=674bp
GAGGTAATCATTAGGCATGGCTCGCCCTGAACATTTGGTCTCGTCCATCA
TCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATCAAGCTTCGACGAC
TCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGACTTCGAGAC
CTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCTTTGCCC
GTTTTGCTCGCAGGTATGGAAAGATTTACGAGTCCGTTGAGGAGATGAAG
CTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATCTACGAA
TCGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTGATTGGA
GCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCACAAAACTGCTCT
GCCACTACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCCAGAAAC
GAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACCAAGGTC
ACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAGGCTGCT
TACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAGAACAGCAGCTTGT
AGACTGTGCCCAAGCTTTCAACAACCAGGGATGCAATGGTGGGTTGCCAT
CCCAAGCCTTTGAATACATCAAAG
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