CN189273

Overview
NameCN189273
Unique NameCN189273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: PEPT1_PSOOV (Peptidase 1 OS=Psoroptes ovis PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 50/169 (29.59%), Postives = 76/169 (44.97%), Query Frame = 2
Query:  191 SFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNH--------KLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIK 673
            +F  F + + K Y + E  +     F  +L+ I    +  +      N+F+D S EEF+   L + Q   A  K           ++ A  +P   D R  G V+ +K+Q  CGSCW FS   ++E+ Y       + LSEQ+LVDCA   +  GC G        YI+
Sbjct:   25 TFEEFKKAFNKHYVTPEAEQEARQNFLASLEHIEKAGKGRI------NQFSDMSLEEFKNQYLMSDQAYEALKKEFDLDAGAQACQIGAVNIPNEIDLRALGYVTKIKNQVACGSCWAFSGVATVESNYLSYDNVSLDLSEQELVDCA---SQHGCGGDTVLNGLRYIQ 184          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 45/161 (27.95%), Postives = 77/161 (47.83%), Query Frame = 2
Query:  194 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGL-SYRLGLNKFADWSWEEFQR---HRLGAAQNCSATTKGNHKLTADVLPETKDWRES-GIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAF 661
            F  F  R+ + Y +  E   R + F+ NL   +   ++ L +   G   F+D + EEF +         +  + T K       + +P T DWR++  I+S VK+QG C  CW  +   +++A +     + + +S Q+L+DC +  N  GCNGG    A+
Sbjct:   40 FKLFQIRFNRSYWNPAEYTRRLSIFAHNLAQAQRLQQEDLGTAEFGETPFSDLTEEEFGQLYGQERSPERTPNMTKKVESNTWGESVPRTCDWRKAKNIISSVKNQGSCKCCWAMAAADNIQALWRIKHQQFVDVSVQELLDCERCGN--GCNGGFVWDAY 198          
BLAST of CN189273 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  440 LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGI-SLSEQQLVDCAQAFNNQGCNGGLPSQAFEYI 670
            LP   DWR+  +V+ V++Q  CG CW FS  G++E+AY    GK +  LS QQ++DC  ++NN GCNGG    A  ++
Sbjct:  108 LPLRFDWRDKQVVTQVRNQQMCGGCWAFSVVGAVESAY-AIKGKPLEDLSVQQVIDC--SYNNYGCNGGSTLNALNWL 182          
The following BLAST results are available for this feature:
BLAST of CN189273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
PEPT1_PSOOV1.205e-1129.59Peptidase 1 OS=Psoroptes ovis PE=1 SV=1[more]
CATW_MOUSE2.056e-1127.95Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
CATO_HUMAN3.507e-1143.59Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189273 ID=CN189273; Name=CN189273; organism=Citrus sinensis; type=EST; length=674bp
GAGGTAATCATTAGGCATGGCTCGCCCTGAACATTTGGTCTCGTCCATCA
TCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATCAAGCTTCGACGAC
TCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGACTTCGAGAC
CTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCTTTGCCC
GTTTTGCTCGCAGGTATGGAAAGATTTACGAGTCCGTTGAGGAGATGAAG
CTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATCTACGAA
TCGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTGATTGGA
GCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCACAAAACTGCTCT
GCCACTACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCCAGAAAC
GAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACCAAGGTC
ACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAGGCTGCT
TACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAGAACAGCAGCTTGT
AGACTGTGCCCAAGCTTTCAACAACCAGGGATGCAATGGTGGGTTGCCAT
CCCAAGCCTTTGAATACATCAAAG
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