CN189271

Overview
NameCN189271
Unique NameCN189271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189271 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 58/205 (28.29%), Postives = 95/205 (46.34%), Query Frame = 1
Query:  169 QDPILIIDVSNWDDPEVIKSICEASGKWGFFQIINHGIPLQVLENITDAAHSFFGLPNEQRSKYYKGASPSETV--FLATSFSPQAEVALEWRDYLSFQYIPGNDQASALWP----PVCKDEVLEYMKKAEIVIXXXXXXXXXXXXXXDFDRDTQHTL------MGSPRIYLNYYPKCPNPELTAGVGPHSDISTITVLPQDDIG 747
            ++ I +ID+SN   P+V   I +AS  WG FQI NHGI  ++L++I   + + F +P+E++    + AS  + V  +     SP  E  + W +  +       +  + LWP      C   + EY+ + E +                 D +  H L      +G   I LN+YP CP PE   G+  H+D + +T+L Q + G
Sbjct:   46 EESIPVIDLSN---PDVTTLIGDASKTWGAFQIANHGISQKLLDDIESLSKTLFDMPSERK---LEAASSDKGVSGYGEPRISPFFEKKM-WSEGFTIADDSYRNHFNTLWPHDHTKYC-GIIQEYVDEMEKLASRLLYCILGSLGVTVEDIEWAHKLEKSGSKVGRGAIRLNHYPVCPEPERAMGLAAHTDSTILTILHQSNTG 242          
BLAST of CN189271 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 63/232 (27.16%), Postives = 104/232 (44.83%), Query Frame = 1
Query:   94 SGIQKVPERYILPPQQRFDLTKVVSQDP------ILIIDVSNWDDPEVIKSICEASGKWGFFQIINHGIPLQVLENITDAAHSFFGLPNEQRSKYYK---GASPSETVFLATSFSPQAEVALEWRDYLSFQYIPGNDQASALWPP----VCK--DEVLEYMKK-AEIVIXXXXXXXXXXXXXXDFDRDTQHTLMGSPRIYLNYYPKCPNPELTAGVGPHSDISTITVLPQDD 741
            + ++++P+ Y   P+   DL    +  P      I +ID+   D P+    I  A   WG FQI NHG+PL +L++I     S FGLP +++ K  +   G S      +A+ F+ Q      W +  +    P ND    LWP      C   +E  E+MKK A  ++              ++   +         + LN+YP CP P+   G+  H+D + +T+L Q++
Sbjct:   25 TSLRELPDSYKWTPKD--DLLFSAAPSPPATGENIPLIDL---DHPDATNQIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETGVSGYGVARIASFFNKQM-----WSEGFTITGSPLND-FRKLWPQHHLNYCDIVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLLTILYQNN 245          
The following BLAST results are available for this feature:
BLAST of CN189271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
G3OX4_ARATH2.252e-1228.29Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
G3OX1_ARATH2.252e-1227.16Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189271 ID=CN189271; Name=CN189271; organism=Citrus sinensis; type=EST; length=748bp
CGTTTAATGTCTTCTTCAACAATTCCGAACTCATTTGATGATGTCACCGA
TTTTGTAGTAAATAGAGGCAATGGAGTAACGGGTCTAGTTGATTCAGGCA
TTCAAAAAGTTCCCGAGAGATATATTCTACCTCCTCAGCAAAGATTCGAC
TTGACCAAAGTAGTTTCTCAAGACCCAATTCTCATCATCGATGTCTCAAA
TTGGGATGATCCTGAGGTCATCAAATCAATCTGCGAAGCTTCAGGTAAGT
GGGGTTTCTTTCAAATAATCAATCATGGAATTCCTCTACAGGTTCTTGAA
AATATCACGGACGCAGCTCATAGTTTCTTTGGGTTGCCAAATGAGCAAAG
GAGCAAGTATTACAAAGGAGCTTCGCCATCTGAAACTGTGTTCTTAGCAA
CAAGCTTTTCTCCTCAGGCCGAGGTGGCTTTGGAATGGAGAGATTACCTG
AGCTTCCAGTACATCCCTGGAAATGATCAGGCTTCTGCTCTATGGCCACC
AGTTTGCAAGGATGAAGTGCTAGAATACATGAAAAAGGCTGAAATTGTCA
TAAAGAATCTATTACAGGTGCTATTGCAAGGACTCAATGTGAAGGATTTT
GACAGAGACACACAACATACTCTAATGGGTTCGCCAAGAATCTACCTCAA
CTACTACCCAAAGTGTCCAAACCCAGAACTCACAGCTGGAGTAGGACCTC
ACTCCGATATATCAACCATTACTGTTCTTCCTCAAGATGATATTGGTG
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