CN189270

Overview
NameCN189270
Unique NameCN189270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.075e-19
Identity = 49/123 (39.84%), Postives = 73/123 (59.35%), Query Frame = -2
Query:  140 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP-----ESGEIPIYKQLVFSDYFNFYFSKPHDGKK 490
            H+D   + +L QDD + GL+V  ++D  W+ VPP+  ++VIN+GD L++I+N KYKS+ HRV+A +  NR+S+  F NP  DAV  P P     E  +  +Y + VF DY   Y       K+
Sbjct:  178 HTDAGGLILLFQDDKVSGLHV--LKDGKWVDVPPMHHSIVINLGDQLEVITNGKYKSVMHRVIAQEDGNRMSIASFYNPGNDAVIYPAPALVEGEQEKTKLYPKFVFDDYMKLYVGLKFQAKE 298          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.405e-19
Identity = 49/107 (45.79%), Postives = 67/107 (62.62%), Query Frame = -2
Query:  179 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP---ESGEIPIYKQLVFSDY 490
            H+D+S +TVL+ +++ GL V   +DD WI    I  ALVI+IGD ++I+SN KYK++ HR   NK K R+S P+F+ P  D V GPLP   +    P YK   F DY
Sbjct:  221 HTDLSALTVLVPNEVPGLQV--FKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 325          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.405e-19
Identity = 50/122 (40.98%), Postives = 72/122 (59.02%), Query Frame = -2
Query:  140 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGP----LPESGEIPIYKQLVFSDYFNFYFSKPHDGKK 490
            H+D   I +L QDD + GL +  ++DD WI VPP++ ++VIN+GD L++I+N KYKS+ HRV+A     R+S+  F NP  DAV  P    L E+    +Y + VF DY   Y       K+
Sbjct:  177 HTDAGGIILLFQDDKVSGLQL--LKDDQWIDVPPMRHSIVINLGDQLEVITNGKYKSVMHRVIAQTDGARMSIASFYNPGDDAVISPASTLLKENETSEVYPKFVFDDYMKLYMGLKFQAKE 296          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.396e-19
Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = -2
Query:  167 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP------ESGEIPIYKQLVFSDYFNFY 490
            H+D   I +L QD+ + GL +  ++D  WI VPP+K ++VINIGD L++I+N KYKS+ HRV+A    NR+S+  F NP  DAV  P P      E  +  +Y + VF DY   Y
Sbjct:  177 HTDAGGIILLFQDNKVSGLQL--LKDGEWIDVPPMKHSIVINIGDQLEVITNGKYKSVMHRVIAQPDGNRMSIASFYNPGSDAVMYPAPALVDKEEDQQKQVYPKFVFEDYMKLY 289          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.129e-19
Identity = 53/130 (40.77%), Postives = 80/130 (61.54%), Query Frame = -2
Query:  119 PHSDISTITVLIQ-DDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP----ESGEIPIYKQLVFSDYFNFYFSKPHDGKKTIDYARI 493
            PHSD + +T+LIQ +++ GL+++  +D+ W+ + PI GA V+NIGDV++I+SN  YKSIEHR V N  K R+S+  F +P      GPLP    E+G    YK + + DY     +   DGK  +D  ++
Sbjct:  227 PHSDATGLTLLIQVNEVNGLHIK--KDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLVKENG--VKYKTIDYEDYLIRSSNIKLDGKSLLDQMKL 352          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.129e-19
Identity = 51/115 (44.35%), Postives = 70/115 (60.87%), Query Frame = -2
Query:  167 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPESGE------IPIYKQLVFSDYFNFY 490
            H+D   I +L QDD + GL +  ++DD WI VPP++ ++VIN+GD L++I+N KYKS+ HRV+A     R+S+  F NPA DAV  P P   E        IY + VF DY   Y
Sbjct:  177 HTDAGGIILLFQDDKVSGLQL--LKDDQWIDVPPMRHSIVINLGDQLEVITNGKYKSVPHRVIAQTDGTRMSLASFYNPASDAVIYPAPALVERDAEENKQIYPKFVFDDYMKLY 289          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.971e-19
Identity = 45/108 (41.67%), Postives = 70/108 (64.81%), Query Frame = -2
Query:  179 PHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE---SGEIPIYKQLVFSDY 493
            PH+DI+ +T++I ++I GL V   +DD WI V  I  A+++NIGD + ++SN KYK++ H+   +K K R+S P+ V+P  D V GPLPE     + P +K + + DY
Sbjct:  174 PHTDINGLTLIITNEIPGLQV--FKDDHWIEVEYIPSAIIVNIGDQIMMLSNGKYKNVLHKTTVDKEKTRMSWPVLVSPTYDMVVGPLPELTSEDDPPKFKPIAYKDY 279          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.189e-18
Identity = 53/129 (41.09%), Postives = 77/129 (59.69%), Query Frame = -2
Query:  119 PHSDISTITVLIQ-DDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGP---LPESGEIPIYKQLVFSDYFNFYFSKPHDGKKTIDYARI 493
            PHSD   +TVL+Q +D+ GL ++  +D  W+ V P+  A ++NIGDVL+II+N  Y+SIEHR V N  K R+S+  F N       GP   L E  ++  +K+L   +Y +  FS+  DGK  +D  RI
Sbjct:  232 PHSDSVGLTVLMQVNDVEGLQIK--KDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.189e-18
Identity = 56/132 (42.42%), Postives = 80/132 (60.61%), Query Frame = -2
Query:  119 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANK-IKNRVSVPIF----VNPAPDAVFGPLPE---SGEIPIYKQLVFSDYFNFYFSKPHDGKKTIDYARI 490
            HSD S +TVL+ D I GL VR   +  W  VP + GAL+INIGD+LQ+I+NDK+ S+EHRV+AN+  + RVSV  F    V P P  ++GP+ E       P Y++    DY  ++ +K  DG   + + +I
Sbjct:  241 HSDNSFLTVLLPDQIEGLQVR--REGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRATRARVSVACFFTTGVRPNP-RMYGPIRELVSEENPPKYRETTIKDYATYFNAKGLDGTSALLHFKI 369          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.649e-18
Identity = 48/115 (41.74%), Postives = 69/115 (60.00%), Query Frame = -2
Query:  167 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPESGE------IPIYKQLVFSDYFNFY 490
            H+D   + +L QDD + GL +  ++D  W+ VPP+  ++VIN+GD +++I+N KYKS+ HRVVA    NR+S+  F NP  DAV  P P   E        +Y + VF DY N Y
Sbjct:  178 HTDAGGLILLFQDDRVAGLQL--LKDGEWVDVPPMNHSIVINLGDQVEVITNGKYKSVMHRVVAQTDGNRMSLASFYNPGSDAVIFPAPALVEKEAEEKKEVYPKFVFEDYMNLY 290          
The following BLAST results are available for this feature:
BLAST of CN189270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
ACCO3_CUCME1.075e-1939.841-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
FLS_CITUN1.405e-1945.79Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
ACCO_PEA1.405e-1940.981-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]
ACCO_ACTDE2.396e-1943.481-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
NCS1_COPJA3.129e-1940.77S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
ACCO4_PETHY3.129e-1944.351-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]
FLS_MATIN6.971e-1941.67Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
SRG1_ARATH1.189e-1841.09Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
ACCH3_ARATH1.189e-1842.421-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO_PERAE2.649e-1841.741-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189270 ID=CN189270; Name=CN189270; organism=Citrus sinensis; type=EST; length=497bp
GGCAGAACGAGACTTTTATTTTGAATTAAGGGATATCATTATTACACTCC
AAAGAAACTGGAATTTCATGCATGGAAAGAAGGCTACTCCCATCCCTATC
GTTATTATTTTCCCATCATATTCTTGCATAGTCAATGGTCTTCTTCCCAT
CATGGGGTTTACTGAAGTAGAAGTTGAAGTAATCTGAGAAAACAAGTTGC
TTGTATATTGGTATCTCTCCACTTTCTGGCAAAGGACCGAAAACGGCATC
AGGTGCAGGGTTCACAAAGATGGGAACTGAAACCCTGTTCTTGATTTTAT
TGGCAACAACTCGATGCTCGATACTTTTGTATTTATCATTGCTTATTATC
TGCAGCACATCACCAATATTAATCACAAGGGCCCCTTTGATTGGAGGGAC
GTGGATCCAGGTGTCATCCTCTATCCCTCTCACGTAAAGCCCACCAATAT
CATCTTGAATAAGAACAGTAATGGTTGATATATCGGAGTGAGGTCCT
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