CN189270

Overview
NameCN189270
Unique NameCN189270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.649e-18
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = -2
Query:  167 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPESGE--IPIYKQLVFSDYFNFY 490
            H+D   I +L QDD + GL +  ++D+ WI VPP++ ++V+N+GD L++I+N KYKS+ HRV+A     R+S+  F NP  DAV  P P   E    +Y + VF DY   Y
Sbjct:  177 HTDAGGIILLFQDDKVSGLQL--LKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGTRMSLASFYNPGNDAVIYPAPSLIEESKQVYPKFVFDDYMKLY 285          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.459e-18
Identity = 47/115 (40.87%), Postives = 69/115 (60.00%), Query Frame = -2
Query:  167 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPESGE------IPIYKQLVFSDYFNFY 490
            H+D   + +L QDD + GL +  ++D  WI VPP++ ++VIN+GD L++I+N KY+S+EHRV+A     R+S+  F NP  DAV  P P   E        +Y + VF DY   Y
Sbjct:  177 HTDAGGLILLFQDDKVSGLQL--LKDGQWIDVPPMRHSIVINLGDQLEVITNGKYRSVEHRVIAQTDGTRMSIASFYNPGSDAVIYPAPTLVEKEAEEKNQVYPKFVFEDYMKLY 289          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.459e-18
Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = -2
Query:  167 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP----ESGEI-PIYKQLVFSDYFNFY 490
            H+D   I +L QDD + GL +  ++D  W+ VPP+  ++VIN+GD +++I+N KYKSI HRV+A     R+S+  F NP  DA   P P    E  E+ P Y + +F DY   Y
Sbjct:  177 HTDAGGIILLFQDDKVSGLQL--LKDGEWMDVPPVHHSIVINLGDQIEVITNGKYKSIMHRVIAQSDGTRMSIASFYNPGDDAFISPAPALLEEKSEVSPTYPKFLFDDYMKLY 288          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.459e-18
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = -2
Query:  167 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP-----ESGEIPIYKQLVFSDYFNFY 490
            HSD   I +L QDD + GL +  ++D  W+ VPP+  ++VIN+GD +++I+N KYKS+ HRV+A     R+S+  F NP  D+   P P     ++ + P Y + VF DY   Y
Sbjct:  177 HSDAGGIILLFQDDKVSGLQL--LKDGEWVDVPPMHHSIVINLGDQIEVITNGKYKSVMHRVIAQSDGTRMSIASFYNPGNDSFISPAPAVLEKKTEDAPTYPKFVFDDYMKLY 288          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.518e-18
Identity = 48/115 (41.74%), Postives = 69/115 (60.00%), Query Frame = -2
Query:  167 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPESGE------IPIYKQLVFSDYFNFY 490
            H+D   I +L QDD + GL +  ++D  WI VPP++ ++V+N+GD L++I+N KYKS+ HRV+A K   R+S+  F NP  DAV  P P   E        +Y + VF DY   Y
Sbjct:  177 HTDAGGIILLFQDDKVSGLQL--LKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLY 289          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO2_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Solanum lycopersicum GN=ACO2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.901e-18
Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  140 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP-------ESGEIPIYKQLVFSDYFNFYFSKPHDGKK 490
            H+D   I +L QDD + GL +  ++D  WI VPP++ ++V+N+GD L++I+N KYKS+ HRV+A K   R+S+  F NP  DA+  P P       E     +Y + +F DY   Y +     K+
Sbjct:  177 HTDAGGIILLFQDDKVSGLQL--LKDGRWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGTRMSLASFYNPGNDALIYPAPALVDKEAEEHNKQVYPKFMFDDYMKLYANLKFQAKE 299          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.707e-18
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = -2
Query:  131 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPESGEIPIYKQLVFSDYFNFYFSKPHDGKKTID 496
            GPH D + +T+L+QDD+GGL V  + D  W  V P+ GA+VINIGD    +SN +YKS  HR V N+ + R S+  F+ P  D V  P P +     Y    ++D   F         +T+D
Sbjct:  247 GPHCDPTALTILLQDDVGGLEV--LVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDFTWADLMRFTQRHYRADTRTLD 366          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.707e-18
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = -2
Query:  131 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPESGEIPIYKQLVFSDYFNFYFSKPHDGKKTID 496
            GPH D + +T+L+QDD+GGL V  + D  W  V P+ GA+VINIGD    +SN +YKS  HR V N+ + R S+  F+ P  D V  P P +     Y    ++D   F         +T+D
Sbjct:  247 GPHCDPTALTILLQDDVGGLEV--LVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDFTWADLMRFTQRHYRADTRTLD 366          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.315e-17
Identity = 46/107 (42.99%), Postives = 66/107 (61.68%), Query Frame = -2
Query:  179 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE---SGEIPIYKQLVFSDY 490
            H+D+ST+T+L+ +D+ GL  +  +D  W  V  I  ALVI+IGD ++I+SN KY S+ HR   NK K R+S P+F+ P  D V GP P+   +   P YK   + DY
Sbjct:  223 HTDMSTVTILVPNDVQGL--QACKDGRWYDVKYIPNALVIHIGDQMEIMSNGKYTSVLHRTTVNKDKTRISWPVFLEPPADHVVGPHPQLVNAVNQPKYKTKKYGDY 327          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.242e-17
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = -2
Query:  167 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPESGE-------IPIYKQLVFSDYFNFY 490
            H+D   I +L QDD + GL +  ++D  WI VPP++ ++V+N+GD L++I+N KYKS+ HRV+A     R+S+  F NP  DAV  P P   E         +Y + VF DY   Y
Sbjct:  177 HTDAGGIILLFQDDKVSGLQL--LKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGTRMSLASFYNPGSDAVIYPAPTLVEKEADQECKQVYPKFVFDDYMKLY 290          
The following BLAST results are available for this feature:
BLAST of CN189270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
ACCO4_SOLLC2.649e-1842.341-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO_PRUMU3.459e-1840.871-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
ACCO2_MALDO3.459e-1841.231-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
ACCO1_MALDO3.459e-1839.471-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
ACCO1_PETHY4.518e-1841.741-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]
ACCO2_SOLLC5.901e-1837.601-aminocyclopropane-1-carboxylate oxidase 2 OS=Sol... [more]
GAOX2_ORYSJ7.707e-1838.52Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI7.707e-1838.52Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
FLS_MALDO1.315e-1742.99Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
ACCO3_PETHY2.242e-1740.521-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189270 ID=CN189270; Name=CN189270; organism=Citrus sinensis; type=EST; length=497bp
GGCAGAACGAGACTTTTATTTTGAATTAAGGGATATCATTATTACACTCC
AAAGAAACTGGAATTTCATGCATGGAAAGAAGGCTACTCCCATCCCTATC
GTTATTATTTTCCCATCATATTCTTGCATAGTCAATGGTCTTCTTCCCAT
CATGGGGTTTACTGAAGTAGAAGTTGAAGTAATCTGAGAAAACAAGTTGC
TTGTATATTGGTATCTCTCCACTTTCTGGCAAAGGACCGAAAACGGCATC
AGGTGCAGGGTTCACAAAGATGGGAACTGAAACCCTGTTCTTGATTTTAT
TGGCAACAACTCGATGCTCGATACTTTTGTATTTATCATTGCTTATTATC
TGCAGCACATCACCAATATTAATCACAAGGGCCCCTTTGATTGGAGGGAC
GTGGATCCAGGTGTCATCCTCTATCCCTCTCACGTAAAGCCCACCAATAT
CATCTTGAATAAGAACAGTAATGGTTGATATATCGGAGTGAGGTCCT
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