CN189270

Overview
NameCN189270
Unique NameCN189270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = -2
Query:  179 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE--SGEIPI-YKQLVFSDY 490
            H+D+S IT+L+ +++ GL V   +DD W  V  I  AL+I+IGD ++I+SN KYKS+ HR   NK K R+S P+F+ P P+ + GP+ +  + E P  +K   + DY
Sbjct:  223 HTDMSAITILVPNEVQGLQVH--KDDHWYDVKYIPNALIIHIGDQIEIMSNGKYKSVYHRTTVNKDKTRMSWPVFLEPPPELLTGPISKLITDENPAKFKTKKYKDY 327          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17
Identity = 46/115 (40.00%), Postives = 68/115 (59.13%), Query Frame = -2
Query:  167 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPESGE------IPIYKQLVFSDYFNFY 490
            H+D   I +L QDD + GL +  ++D+ WI VPP++ ++V+N+GD L++I+N KYKS+ HRV+A     R+S+  F NP  DAV  P     E        +Y + VF DY   Y
Sbjct:  177 HTDAGGIILLFQDDKVSGLQL--LKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGTRMSLASFYNPGSDAVIYPAKTLVEKEAEESTQVYPKFVFDDYMKLY 289          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: FL3H_PETHY (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Petunia hybrida GN=AN3 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.995e-17
Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = -2
Query:  158 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP-ESGEIPIYKQ-LVFSDYFNFYFSK 490
            H+D  TIT+L+QD +GGL        TWI V P++GA V+N+GD    +SN ++K+ +H+ V N   +R+S+  F NPAP+A+  PL    GE  I  + + F++ +    SK
Sbjct:  220 HTDPGTITLLLQDQVGGLQATKDNGKTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSNSSRLSIATFQNPAPEAIVYPLKIREGEKSIMDEPITFAEMYRRKMSK 332          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.995e-17
Identity = 43/113 (38.05%), Postives = 70/113 (61.95%), Query Frame = -2
Query:  158 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP-ESGEIPIYK-QLVFSDYFNFYFSK 490
            H+D  TIT+L+QD +GGL     +  TWI V P++GA V+N+GD   ++SN ++K+ +H+ V N   +R+S+  F NPA +A+  PL    GE PI +  + +++ +    SK
Sbjct:  218 HTDPGTITLLLQDQVGGLQATRDDGKTWITVQPVEGAFVVNLGDHGHLLSNGRFKNADHQAVVNSNSSRLSIATFQNPAQEAIVYPLSVREGEKPILEAPITYTEMYKKKMSK 330          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.995e-17
Identity = 47/126 (37.30%), Postives = 73/126 (57.94%), Query Frame = -2
Query:  140 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKI-KNRVSVPIFVNPAPDAVFGPLP-------ESGEIPIYKQLVFSDYFNFYFSKPHDGKK 490
            H+D   I +L QDD + GL +  ++D  W+ VPP+K ++V+N+GD L++I+N KYKS+EHRV++    + R+S+  F NP  D+V  P P       E  +   Y + VF DY   Y +     K+
Sbjct:  177 HTDAGGIILLFQDDKVSGLQL--LKDGEWVDVPPVKHSIVVNLGDQLEVITNGKYKSVEHRVLSQTDGEGRMSIASFYNPGSDSVIFPAPELIGKEAEKEKKENYPRFVFEDYMKLYSAVKFQAKE 300          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: FL3H_MATIN (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17
Identity = 42/107 (39.25%), Postives = 68/107 (63.55%), Query Frame = -2
Query:  176 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP-ESGEIPIYKQ-LVFSDYF 490
            H+D  TIT+L+QD +GGL     + +TWI V P++GA V+N+GD    +SN ++K+ +H+ V N   +R+S+  F NPAP+A   PL    GE  I ++ + F++ +
Sbjct:  216 HTDPGTITLLLQDQVGGLQATRDDGNTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSNSSRLSIATFQNPAPEATVYPLKVREGEKAIMEEPITFAEMY 322          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: FL3H_ARATH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17
Identity = 43/107 (40.19%), Postives = 66/107 (61.68%), Query Frame = -2
Query:  176 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP-ESGEIPIYKQ-LVFSDYF 490
            H+D  TIT+L+QD +GGL        TWI V P++GA V+N+GD    +SN ++K+ +H+ V N   +R+S+  F NPAPDA   PL    GE  I ++ + F++ +
Sbjct:  217 HTDPGTITLLLQDQVGGLQATRDNGKTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSNSSRLSIATFQNPAPDATVYPLKVREGEKAILEEPITFAEMY 323          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.521e-17
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = -2
Query:  167 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPESGE------IPIYKQLVFSDYFNFY 490
            H+D   I +L QDD + GL +  ++D  WI VPP++ ++V+N+GD L++I+N KYKS+ HRV+      R+S+  F NP  DAV  P P   E        IY + VF DY   Y
Sbjct:  177 HTDAGGIILLFQDDKVTGLQL--LKDGQWIDVPPMRLSIVVNLGDQLEVITNGKYKSVMHRVITQTDGTRMSLASFYNPGSDAVIFPAPTLVEKEAEESKAIYPKFVFDDYMKLY 289          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.453e-16
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = -2
Query:  179 PHSDISTITVLIQDDIGGLYVRGIEDD--TWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPL-PESGEIPIYKQLVFSDY 493
            PH+D S +T+L Q +I GL +   +++   WI V PI+G+LV+ +GD+  IISN +++S  HR V NK  +RVS   F  P  +   GPL  +    PIY++L++ +Y
Sbjct:  225 PHTDSSLLTILYQGNIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKTHHRVSAAYFAGPPKNLQIGPLTSDKNHPPIYRRLIWEEY 332          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.453e-16
Identity = 46/110 (41.82%), Postives = 65/110 (59.09%), Query Frame = -2
Query:  167 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE-SGEIPIYKQLVFSDYFNFY 490
            H+D   I +L QDD + GL +  ++D  WI VPP+  ++VIN+GD L++I+N +YKS+ HRVV  K  NR+S+  F NP  DA   P    + +   Y   VF DY   Y
Sbjct:  180 HTDAGGIILLFQDDKVTGLQL--LKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQKEGNRMSIASFYNPGSDAEISPASSLACKETEYPSFVFDDYMKLY 287          
The following BLAST results are available for this feature:
BLAST of CN189270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
FLS_PETCR3.825e-1742.06Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]
ACCO1_SOLLC3.825e-1740.001-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
FL3H_PETHY4.995e-1738.94Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
FL3H_MALDO4.995e-1738.05Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]
ACCO1_ARATH4.995e-1737.301-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
FL3H_MATIN6.524e-1739.25Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
FL3H_ARATH6.524e-1740.19Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabido... [more]
ACCO_TOBAC8.521e-1740.871-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]
G3OX3_ARATH1.453e-1639.81Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
ACCO1_BRAJU1.453e-1641.821-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189270 ID=CN189270; Name=CN189270; organism=Citrus sinensis; type=EST; length=497bp
GGCAGAACGAGACTTTTATTTTGAATTAAGGGATATCATTATTACACTCC
AAAGAAACTGGAATTTCATGCATGGAAAGAAGGCTACTCCCATCCCTATC
GTTATTATTTTCCCATCATATTCTTGCATAGTCAATGGTCTTCTTCCCAT
CATGGGGTTTACTGAAGTAGAAGTTGAAGTAATCTGAGAAAACAAGTTGC
TTGTATATTGGTATCTCTCCACTTTCTGGCAAAGGACCGAAAACGGCATC
AGGTGCAGGGTTCACAAAGATGGGAACTGAAACCCTGTTCTTGATTTTAT
TGGCAACAACTCGATGCTCGATACTTTTGTATTTATCATTGCTTATTATC
TGCAGCACATCACCAATATTAATCACAAGGGCCCCTTTGATTGGAGGGAC
GTGGATCCAGGTGTCATCCTCTATCCCTCTCACGTAAAGCCCACCAATAT
CATCTTGAATAAGAACAGTAATGGTTGATATATCGGAGTGAGGTCCT
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