CN189270

Overview
NameCN189270
Unique NameCN189270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.230e-15
Identity = 52/132 (39.39%), Postives = 78/132 (59.09%), Query Frame = -2
Query:  119 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKN-RVSVPIF----VNPAPDAVFGPLPE-SGEI--PIYKQLVFSDYFNFYFSKPHDGKKTIDYARI 490
            H+D S +T+L+ D+ GGL V  + D  WI VPP   AL+ N+GD LQ+ISNDK+ S+EHR++AN  +  R+SV  F           V+GP+ E   E+  P Y+    S+  N Y ++  +G  ++D+ RI
Sbjct:  231 HTDRSFLTILLNDNNGGLQV--LYDGYWIDVPPNPEALIFNVGDFLQLISNDKFVSMEHRILANGGEEPRISVACFFVHTFTSPSSRVYGPIKELLSELNPPKYRDTT-SESSNHYVARKPNGNSSLDHLRI 359          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.230e-15
Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = -2
Query:  140 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGP-----LPESGEIPIYKQLVFSDYFNFYFSKPHDGKK 490
            H+D   + +L QDD +GGL +  ++D  WI V P+  A+VIN GD ++++SN +YKS  HRV+A    NR S+  F NP+  A   P       E+    +Y + +F DY + Y  + ++ K+
Sbjct:  177 HTDAGGVILLFQDDQVGGLQM--LKDGRWIDVQPLADAIVINTGDQIEVLSNGRYKSAWHRVLATSHGNRRSIASFYNPSLKATIAPAAGAATEEAAPPALYPKFLFGDYMDVYAKQKYEPKE 297          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: FLS1_ARATH (Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.607e-15
Identity = 40/107 (37.38%), Postives = 64/107 (59.81%), Query Frame = -2
Query:  179 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE---SGEIPIYKQLVFSDY 490
            H+D+S IT+L+ +++ GL V   +DD W     I  A++++IGD +  +SN +YK++ HR   +K K R+S P+F+ P  + + GPLPE       P +K   F DY
Sbjct:  221 HTDLSGITLLVPNEVPGLQV--FKDDHWFDAEYIPSAVIVHIGDQILRLSNGRYKNVLHRTTVDKEKTRMSWPVFLEPPREKIVGPLPELTGDDNPPKFKPFAFKDY 325          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.580e-15
Identity = 41/109 (37.61%), Postives = 66/109 (60.55%), Query Frame = -2
Query:  179 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE---SGEIPIYKQLVFSDY 496
            G H+D   I+VL  +   GL +  + D TW+ VPP + +  IN+GD LQ+++N ++KS++HRV+A+  K+R+S+  F  PA      PLP     GE  +YK+  + +Y
Sbjct:  202 GEHTDPQIISVLRSNSTSGLQIC-LTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTTKSRLSMIYFGGPALSENIAPLPSVMLKGEECLYKEFTWCEY 309          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: FNSI_PETCR (Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.676e-15
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = -2
Query:  230 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPL 490
            H+D  TIT+L+QD +GGL        TWI V P++GA V+N+GD    +SN ++++ +H+ V N   +R+S+  F NPA +A+  PL
Sbjct:  218 HTDPGTITILLQDMVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGHYLSNGRFRNADHQAVVNSTSSRLSIATFQNPAQNAIVYPL 304          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.031e-14
Identity = 41/128 (32.03%), Postives = 69/128 (53.91%), Query Frame = -2
Query:  119 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE--SGEIPIYKQLVFSDYFNFYFSKPHDGKKTIDYARI 496
            G H+D   I++L  ++  G  +  + D +WI VPP   +  IN+GD LQ+++N ++KS+ HRV+AN I  R+S+  F  P       PLP    G+  +YK+  + +Y +  +       +  +Y RI
Sbjct:  198 GEHTDPQIISILRSNNTSGFQI-SLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGIDPRLSMIYFCGPPLSEKIAPLPSLMKGKESLYKEFTWFEYKSSTYGSRLADNRLGNYERI 324          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.958e-14
Identity = 39/107 (36.45%), Postives = 63/107 (58.88%), Query Frame = -2
Query:  179 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP---ESGEIPIYKQLVFSDY 490
            H+D+S IT+L+ ++     V+  +D  W  V  I  A++++IGD ++I+SN KYKS+ HR   NK K R+S P+F+ P+ +   GP+P        P +K   + DY
Sbjct:  238 HTDMSYITLLVPNE-----VQVFKDGHWYDVNYIPNAIIVHIGDQVEILSNGKYKSVYHRTTVNKYKTRMSWPVFLEPSSEHEVGPIPNLINEANPPKFKTKKYKDY 339          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 5.169e-14
Identity = 39/108 (36.11%), Postives = 63/108 (58.33%), Query Frame = -2
Query:  179 HSDISTITVLIQDDIGGLYVRGIEDDT-WIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE---SGEIPIYKQLVFSDY 490
            H+D + +T+L Q++  GL V    DD  W+ VPP  G+LV+N+GD+  I+SN  +KS+ HR   N+ + R+SV     P  D    P+P+     E P+Y+ + + +Y
Sbjct:  232 HTDSTLLTILYQNNTAGLQV--FRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRARLSVAFLWGPQSDIKISPVPKLVSPVESPLYQSVTWKEY 337          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.504e-13
Identity = 42/119 (35.29%), Postives = 65/119 (54.62%), Query Frame = -2
Query:  149 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE---SGEIPIYKQLVFSDYFNFYFSKPHD 496
            G H D + IT L+Q D+ GL    ++D TWI V PI  A V+N+G  L++I+N+K++   HRVV +  ++RVS+   + P       P  E       P+YK   +S++ + Y S   D
Sbjct:  215 GGHYDGNLIT-LLQQDLPGLQQLIVKDATWIAVQPIPTAFVVNLGLTLKVITNEKFEGSIHRVVTDPTRDRVSIATLIGPDYSCTIEPAKELLNQDNPPLYKPYSYSEFADIYLSDKSD 332          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.964e-13
Identity = 40/141 (28.37%), Postives = 70/141 (49.65%), Query Frame = -2
Query:   74 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE--SGEIPIYKQLVFSDYFNFYFSKPHDGKKTIDYARI*WENNNDRDGSSLLS 490
            H+D    T ++Q  + GL +     D W+ VP + GA+V+N+GD+ QI++N ++ S+ HR V N+  +R+S+  F+ P       PL E  +G    Y+ + + +Y          G   +    I  +N+   D   L+S
Sbjct:  229 HTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALAGTPAAYRAVTWPEYMGVRKKAFTTGASALKMVAISTDNDAANDTDDLIS 369          
The following BLAST results are available for this feature:
BLAST of CN189270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
GSL_ARATH1.230e-1539.39Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
ACCO_MUSAC1.230e-1535.771-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
FLS1_ARATH1.607e-1537.38Flavonol synthase/flavanone 3-hydroxylase OS=Arabi... [more]
G2OX_PHACN3.580e-1537.61Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
FNSI_PETCR4.676e-1541.38Flavone synthase OS=Petroselinum crispum GN=FNSI P... [more]
G2OX1_PEA3.031e-1432.03Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
FLS_SOLTU3.958e-1436.45Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]
G3OX1_ARATH5.169e-1436.11Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
HY6H_HYONI1.504e-1335.29Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
G3O21_WHEAT1.964e-1328.37Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189270 ID=CN189270; Name=CN189270; organism=Citrus sinensis; type=EST; length=497bp
GGCAGAACGAGACTTTTATTTTGAATTAAGGGATATCATTATTACACTCC
AAAGAAACTGGAATTTCATGCATGGAAAGAAGGCTACTCCCATCCCTATC
GTTATTATTTTCCCATCATATTCTTGCATAGTCAATGGTCTTCTTCCCAT
CATGGGGTTTACTGAAGTAGAAGTTGAAGTAATCTGAGAAAACAAGTTGC
TTGTATATTGGTATCTCTCCACTTTCTGGCAAAGGACCGAAAACGGCATC
AGGTGCAGGGTTCACAAAGATGGGAACTGAAACCCTGTTCTTGATTTTAT
TGGCAACAACTCGATGCTCGATACTTTTGTATTTATCATTGCTTATTATC
TGCAGCACATCACCAATATTAATCACAAGGGCCCCTTTGATTGGAGGGAC
GTGGATCCAGGTGTCATCCTCTATCCCTCTCACGTAAAGCCCACCAATAT
CATCTTGAATAAGAACAGTAATGGTTGATATATCGGAGTGAGGTCCT
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