CN189270

Overview
NameCN189270
Unique NameCN189270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.964e-13
Identity = 39/111 (35.14%), Postives = 66/111 (59.46%), Query Frame = -2
Query:  173 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP---ESGEIPIYKQLVFSDYFN 496
            G H+D   I+VL  ++  GL +  + D +WI VPP   +   N+GD LQ+++N ++KS+ HRV+AN  K+RVS+  F  P+      PL    ++ +  +Y++  +S+Y N
Sbjct:  195 GEHTDPQIISVLRSNNTSGLQIN-LNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCKKSRVSMIYFAGPSLTQRIAPLTCLIDNEDERLYEEFTWSEYKN 304          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.566e-13
Identity = 37/108 (34.26%), Postives = 62/108 (57.41%), Query Frame = -2
Query:  179 HSDISTITVLIQDDIGGLYVRGIEDDT-WIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP---ESGEIPIYKQLVFSDY 490
            H+D + +T+L Q++  GL V    DD  W+  PP+ G+LV+N+GD+L I++N  + S+ HR   N +++R S+     P  D +  PLP   +  + P+Y  L +  Y
Sbjct:  225 HTDSTLMTILYQNNTAGLQV--FRDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRARVNHVRSRFSMAYLWGPPSDIMISPLPKLVDPLQSPLYPSLTWKQY 330          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.376e-13
Identity = 37/109 (33.94%), Postives = 65/109 (59.63%), Query Frame = -2
Query:  179 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP---ESGEIPIYKQLVFSDY 496
            G H+D   I+VL  ++  GL +  ++D +W+ VPP   +  IN+GD LQ+++N ++KS++HRV+A+  ++R+S+  F  P       PLP      +  +YK+  +S Y
Sbjct:  205 GEHTDPQIISVLRSNNTAGLQIC-VKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISMIYFGGPPLSQKIAPLPCLVPEQDDWLYKEFTWSQY 312          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ISP7_SCHPO (Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe GN=isp7 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.465e-13
Identity = 40/114 (35.09%), Postives = 65/114 (57.02%), Query Frame = -2
Query:  161 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPESGEI---PIYKQLVFSDYF-NFYFS 490
            H+D   +T++ QD++ GL +     + ++ V P  GAL+ N+GD++ I++N++YKS  HRV  N   +R ++P F+    D V  PLP  G     PI  + +  D+F N Y S
Sbjct:  276 HTDADALTLMSQDNVKGLEILDPVSNCFLSVSPAPGALIANLGDIMAILTNNRYKSSMHRVCNNSGSDRYTIPFFLQGNIDYVVAPLPGLGPSTAEPIAVEDLLRDHFQNSYTS 389          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 7.465e-13
Identity = 40/112 (35.71%), Postives = 56/112 (50.00%), Query Frame = -2
Query:  167 PHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE---SGEIPIYKQLVFSDYFNFY 493
            PH D + IT+L+   + GL V    D  WI V P   A V+N G  L++++N   KSIEHR + N    R SV  F+ P  + + GP  E       P Y+  +F D+   Y
Sbjct:  208 PHCDRNLITLLLPGAVNGLEVSYKGD--WIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSALARTSVATFIMPTQECLIGPAKEFLSKENPPCYRTTMFRDFMRIY 317          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12
Identity = 34/106 (32.08%), Postives = 60/106 (56.60%), Query Frame = -2
Query:  179 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE--SGEIPIYKQLVFSDY 490
            H+D    T ++Q  + GL +     D W+ VP + GA+V+N+GD+ QI++N ++ S+ HR V N+  +R+S+  F+ P       PL E  +G    Y+ + + +Y
Sbjct:  229 HTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESDRISLGYFLGPPAHVKVAPLREALAGTPAAYRAVTWPEY 334          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12
Identity = 34/106 (32.08%), Postives = 60/106 (56.60%), Query Frame = -2
Query:  179 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE--SGEIPIYKQLVFSDY 490
            H+D    T ++Q  + GL +     D W+ VP + GA+V+N+GD+ QI++N ++ S+ HR V N+  +R+S+  F+ P       PL E  +G    Y+ + + +Y
Sbjct:  229 HTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALAGTPAAYRAVTWPEY 334          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.172e-12
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = -2
Query:  224 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE 496
            GPH D +++T+L QD +GGL V    D+ W  +PP   A V+NIGD    ++N +YKS  HR V N  + R +   F+ P  + V  P  E
Sbjct:  244 GPHCDPTSLTILHQDQVGGLQV--FVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERERKTFAFFLCPKGEKVVKPPEE 332          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.705e-12
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = -2
Query:  131 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVP-IFVNPAPDAVFGPLPE---SGEIPIYKQLVFSDYFNF---YFSKPHDGKKTID 490
            H+D + +T+L Q + GGL V   E+  W+ V P  G LV+NIGD+  I+SN K  S+ HR   N  ++R+S+  ++  PA D    P+ +     E  +Y+ + + +Y       F K  D  + ++
Sbjct:  227 HTDSTILTILHQSNTGGLQVFR-EESGWVTVEPAPGVLVVNIGDLFHILSNGKIPSVVHRAKVNHTRSRISIAYLWGGPAGDVQIAPISKLTGPAEPSLYRSITWKEYLQIKYEVFDKAMDAIRVVN 352          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.705e-12
Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = -2
Query:  131 PHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPESGEIPIYKQLVFSDYFNFYFSKPHDGKKTID 493
            PH+D S +T+L QD IGGL +    +  WI V P   AL +NIGD+ Q +SN  Y+S+ HRV++     R+S+  FV P  +     +   G    Y++  F +Y        HD K+T D
Sbjct:  215 PHTDTSFLTILSQDQIGGLELEN--NGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIERMSIAFFVCPYLET---EIDCFGYPKKYRRFSFREYKE---QSEHDVKETGD 327          
The following BLAST results are available for this feature:
BLAST of CN189270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
G2OX1_ARATH1.964e-1335.14Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G3OX2_ARATH2.566e-1334.26Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G2OX2_ARATH4.376e-1333.94Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
ISP7_SCHPO7.465e-1335.09Sexual differentiation process protein isp7 OS=Sch... [more]
IDS3_HORVU7.465e-1335.712'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
G3O23_WHEAT1.273e-1232.08Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
G3O22_WHEAT1.273e-1232.08Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
GAOX3_ARATH2.172e-1239.56Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
G3OX4_ARATH3.705e-1231.50Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
G2OX7_ARATH3.705e-1236.36Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189270 ID=CN189270; Name=CN189270; organism=Citrus sinensis; type=EST; length=497bp
GGCAGAACGAGACTTTTATTTTGAATTAAGGGATATCATTATTACACTCC
AAAGAAACTGGAATTTCATGCATGGAAAGAAGGCTACTCCCATCCCTATC
GTTATTATTTTCCCATCATATTCTTGCATAGTCAATGGTCTTCTTCCCAT
CATGGGGTTTACTGAAGTAGAAGTTGAAGTAATCTGAGAAAACAAGTTGC
TTGTATATTGGTATCTCTCCACTTTCTGGCAAAGGACCGAAAACGGCATC
AGGTGCAGGGTTCACAAAGATGGGAACTGAAACCCTGTTCTTGATTTTAT
TGGCAACAACTCGATGCTCGATACTTTTGTATTTATCATTGCTTATTATC
TGCAGCACATCACCAATATTAATCACAAGGGCCCCTTTGATTGGAGGGAC
GTGGATCCAGGTGTCATCCTCTATCCCTCTCACGTAAAGCCCACCAATAT
CATCTTGAATAAGAACAGTAATGGTTGATATATCGGAGTGAGGTCCT
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