CN189270

Overview
NameCN189270
Unique NameCN189270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.838e-12
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = -2
Query:  224 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE 496
            GPH D +++T+L QD +GGL V    +  W  + P  GALV+N+GD    +SN +Y+S  HR V N    R S+  F+ P  D V  P  E
Sbjct:  232 GPHCDPTSLTILHQDHVGGLEVWA--EGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNSTAPRRSLAFFLCPEMDTVVRPPEE 320          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.838e-12
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = -2
Query:  233 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGP 496
            GPH D +++T+L QD + GL V    ++ W  + P   A V+NIGD    +SND+YKS  HR V N    R S+  F+ P  D V  P
Sbjct:  245 GPHCDPTSLTILHQDHVNGLQV--FVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESERKSLAFFLCPKKDRVVTP 330          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.319e-12
Identity = 39/119 (32.77%), Postives = 66/119 (55.46%), Query Frame = -2
Query:  146 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPD-AVFGPLPES---GEIPIYKQLVFSDYFNFYFSKPHDG 490
            H+D+S +T ++ + + GL +    +D W+    +  +++++IGD L+I+SN KYKSI HR + NK K R+S  +F  P  +  V  PLPE+    E P +    F+ +      +  DG
Sbjct:  238 HTDVSALTFILHNMVPGLQL--FYEDKWVTAKCVPNSIIMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKIVLQPLPETVSEVEPPRFPPRTFAQHLKHKLFRKTDG 354          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.253e-12
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = -2
Query:  233 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGP 496
            GPH D +++T+L QD++GGL V    +  W  + P   A V+NIGD    +SN +YKS  HR V N    R S+  F+ P  D V  P
Sbjct:  222 GPHCDPTSLTILHQDNVGGLQVH--TEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAP 307          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.253e-12
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = -2
Query:  233 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGP 496
            GPH D +++T+L QD++GGL V    +  W  + P   A V+NIGD    +SN +YKS  HR V N    R S+  F+ P  D V  P
Sbjct:  222 GPHCDPTSLTILHQDNVGGLQVH--TEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAP 307          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.253e-12
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = -2
Query:  233 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGP 496
            GPH D +++T+L QD++GGL V    +  W  + P   A V+NIGD    +SN +YKS  HR V N    R S+  F+ P  D V  P
Sbjct:  222 GPHCDPTSLTILHQDNVGGLQVH--TEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAP 307          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.401e-11
Identity = 35/110 (31.82%), Postives = 62/110 (56.36%), Query Frame = -2
Query:  179 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPL----PESGEIPIYKQLVFSDY 496
            G H+D   I++L  +D  GL +  ++D TW+ V P   +  + +GD LQ+++N ++KS++HRVV N  ++R+S+  F  P       PL    P+  +  +Y +  +S Y
Sbjct:  200 GEHTDPQLISLLRSNDTEGLQIC-VKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDC-LYNEFTWSQY 307          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.096e-11
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = -2
Query:  224 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPD-AVFGPLPE 490
            H+D+S +T ++ + + GL +    +  W+    +  ++V++IGD L+I+SN KYKSI HR + NK K R+S  +F  P  D  V  PLPE
Sbjct:  232 HTDVSALTFILHNMVPGLQL--FYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPE 319          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.350e-11
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = -2
Query:  179 PHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPE---SGEIPIYKQLVFSDY 493
            PH D   +TVL+   + GL +       WI V P+  +LVIN G  L++++N   K++EHR   N  + R+SV  F+ PA D V GP  E       P Y+ L   ++
Sbjct:  207 PHCDRDLMTVLLPGAVPGLEIA--YKGGWIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATNFAEPRLSVASFIVPADDCVVGPAEEFVSEDNPPRYRTLTVGEF 312          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.350e-11
Identity = 36/88 (40.91%), Postives = 48/88 (54.55%), Query Frame = -2
Query:  233 GPHSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGP 496
            GPH D S++T+L QD + GL V    D+ W  + P   A V+NIGD    +SN  +KS  HR V N+   R S+  F+ P  D V  P
Sbjct:  243 GPHCDPSSLTILHQDHVNGLQV--FVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMAFFLCPKKDKVVKP 328          
The following BLAST results are available for this feature:
BLAST of CN189270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
GAOX1_ORYSJ4.838e-1240.66Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
GAOX1_ARATH4.838e-1240.91Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
LDOX_PERFR6.319e-1232.77Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
GAO1D_WHEAT8.253e-1240.91Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAO1B_WHEAT8.253e-1240.91Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAO1A_WHEAT8.253e-1240.91Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
G2OX3_ARATH2.401e-1131.82Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
LDOX_ARATH4.096e-1138.89Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
IDS2_HORVU5.350e-1135.19Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
GAOX2_ARATH5.350e-1140.91Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189270 ID=CN189270; Name=CN189270; organism=Citrus sinensis; type=EST; length=497bp
GGCAGAACGAGACTTTTATTTTGAATTAAGGGATATCATTATTACACTCC
AAAGAAACTGGAATTTCATGCATGGAAAGAAGGCTACTCCCATCCCTATC
GTTATTATTTTCCCATCATATTCTTGCATAGTCAATGGTCTTCTTCCCAT
CATGGGGTTTACTGAAGTAGAAGTTGAAGTAATCTGAGAAAACAAGTTGC
TTGTATATTGGTATCTCTCCACTTTCTGGCAAAGGACCGAAAACGGCATC
AGGTGCAGGGTTCACAAAGATGGGAACTGAAACCCTGTTCTTGATTTTAT
TGGCAACAACTCGATGCTCGATACTTTTGTATTTATCATTGCTTATTATC
TGCAGCACATCACCAATATTAATCACAAGGGCCCCTTTGATTGGAGGGAC
GTGGATCCAGGTGTCATCCTCTATCCCTCTCACGTAAAGCCCACCAATAT
CATCTTGAATAAGAACAGTAATGGTTGATATATCGGAGTGAGGTCCT
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