CN189261

Overview
NameCN189261
Unique NameCN189261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9707 contig Csv1_Contig9707:187..956. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.113e-61
Identity = 112/164 (68.29%), Postives = 144/164 (87.80%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 597
            N+TNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEYANN++R+TI+RYKKAC+DS+N  ++ E N  +YQQE+ KLR+QI+ IQN NR+++G++LS+L+ KELK +E RLEK I R+RSKK+E+LL EIE  +KREI+L N+N+YLR +++E ER
Sbjct:   13 NSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVER 176          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.158e-57
Identity = 107/167 (64.07%), Postives = 141/167 (84.43%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACADSSNPGSITEANT-QFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERA 600
            N T+RQVTFCKRRNGLLKKAYEL++LCDAE+ALIVFSSRGRLYE++N NS R+TI+RYKKA A +S    + + N+ Q++QQEA K+R QI+ +QN NRH++GE++  +  KELK+LE RLEKGI R+RSKK+E+L +EIE+M+KRE  LQN+NM+LRA+++E ERA
Sbjct:   13 NKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERA 179          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 9.187e-57
Identity = 113/167 (67.66%), Postives = 141/167 (84.43%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGS-ITEANTQ-FYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 597
            NTT+RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+NN+ V+ATIDRYKKA A  S  G+ + E N Q +YQQE+ KLR QI+ +QN N+H++G+ +S L+ KELK LE+RLEKGI ++R++KNE+L +EI +M KREI+LQNDNM LR +I+E E+
Sbjct:   13 NTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEEQ 179          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.686e-34
Identity = 77/165 (46.67%), Postives = 108/165 (65.45%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERA 600
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ +  + +TI+RY + C + S   +  E  TQ + QE TKL+ +   +   NR++LGE L  +  KEL+ LE +LE  +   R +K ++++ E+E + K+E QL + N  L+ +      A
Sbjct:   13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERYNR-CYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHA 176          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.876e-34
Identity = 71/159 (44.65%), Postives = 108/159 (67.92%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARI 582
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ +  +  T++RY+  C ++ +  +   + TQ +  E +KL+ +   +Q   RH+LGE L  L+ KEL+ LE +LE  + + R +K ++++ ++E + ++E QL   N  L+ ++
Sbjct:   13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNAL-SETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKL 170          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.407e-34
Identity = 74/160 (46.25%), Postives = 112/160 (70.00%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIS 585
            N+T+RQVTF KRRNG+ KKA EL++LCDAEV L++FSS GRLYEY++ S+++ IDRY K+  D     +   +  +F+Q+EA  LR+Q+  +Q  +R ++GE LS LN KEL++LE +LE  +  VR+KK+ +L+ EI  + ++   +  +NM L  +IS
Sbjct:   13 NSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKS-KDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKIS 171          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.864e-33
Identity = 84/223 (37.67%), Postives = 127/223 (56.95%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGS-ITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARI-----SENERAXXXXXXXXXXXXGGGHVYEPAASQPYDRNFLPVNLLEPNHQYARQDDQAPSS 756
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FSSRG+LYE+ +  +  T+++Y   C ++    S +     Q + QE ++L+ ++  +Q   RH+LGE L  L+ KEL+ LE +LE  + + R +K ++++ +++ + ++E QL   N  L+ ++     S N R+             GG V    A  P D +  P  L    +Q+ R +   P S
Sbjct:   13 NKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVVSGGRVLN--AQPPPDIDCEP-TLQIGYYQFVRPEAANPRS 232          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.251e-33
Identity = 68/163 (41.72%), Postives = 112/163 (68.71%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 594
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEV+LI+FS +G+LYE+A+++++ TIDRY +   D  +   ++E N Q  + EA  + ++I +++   R +LGE + T + +EL+ +E +LEK +  +R++K ++   +IE ++++E  L  +N  L  +   +E
Sbjct:   13 NATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHE 175          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.996e-32
Identity = 75/163 (46.01%), Postives = 111/163 (68.10%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISEN 591
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALIVFS+RG+LYE+ + S +  T++RY++ C+  S   S     T+   QE  KL+ ++  +Q  +R++LGE L  L+ KEL+ LE +L+K + ++RS K + +L ++  ++K+E  L   N  L+ ++ E+
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQR-CSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEES 174          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.996e-32
Identity = 77/187 (41.18%), Postives = 114/187 (60.96%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXXGGGHVYEPA 663
            N  NRQVTF KRR  LLKKAYELSVLCDAEVALI+FS+RG+LYE+ ++ S+  T+++Y+K C   S   +I    TQ  QQE  KL+ ++  +Q   R++LGE L  L  KEL+ LE +L+  + ++RS + + +L ++  +++RE  L   N  L+ R  E+ +A              G+  +PA
Sbjct:   13 NKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQK-CNFGSPESTIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQQQVWDPSNTHAVGYGRQPA 198          
The following BLAST results are available for this feature:
BLAST of CN189261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL11_ARATH2.113e-6168.29Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MAD21_ORYSJ3.158e-5764.07MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD13_ORYSJ9.187e-5767.66MADS-box transcription factor 13 OS=Oryza sativa s... [more]
AGL6_ARATH1.686e-3446.67Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
MADS6_ORYSJ2.876e-3444.65MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD27_ORYSJ6.407e-3446.25MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD17_ORYSJ1.864e-3337.67MADS-box transcription factor 17 OS=Oryza sativa s... [more]
SOC1_ARATH9.251e-3341.72MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
CMB1_DIACA5.996e-3246.01MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
AGL9_ARADE5.996e-3241.18Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189261 ID=CN189261; Name=CN189261; organism=Citrus sinensis; type=EST; length=770bp
GCGGGTAAGTTACCAGCAACCATGGAGTTTCCAAAACAAAACCCTTAAAG
CTCAAGCCAAAGCAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGA
TCGAGAACACAACAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGA
TTGTTGAAGAAAGCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGC
TCTCATCGTCTTCTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACA
GTGTCAGAGCAACAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCT
AACCCAGGATCTATTACTGAAGCTAACACTCAGTTTTACCAGCAAGAAGC
CACAAAACTACGAAGACAAATCCGGGAGATTCAGAATTTGAACAGGCACA
TTCTGGGTGAGGCCCTCAGCACTTTAAACTTTAAGGAGCTCAAGAACCTT
GAGGCAAGACTTGAGAAGGGAATCGGCAGAGTCAGATCCAAGAAGAACGA
AATGTTATTAGCTGAAATCGAGTTCATGGAGAAGAGGGAAATTCAGCTTC
AAAATGATAACATGTACCTGAGAGCAAGGATATCTGAAAATGAGAGAGCA
CAACAAGAACGGCAATCAGAAAGCATGATGCAGCAAGGAGGAGGGCATGT
GTACGAGCCCGCGGCTTCACAGCCCTATGACCGAAACTTCCTTCCTGTAA
ACCTCTTGGAACCCAATCACCAGTACGCTCGCCAAGACGATCAGGCCCCC
TCTTCAACTTGTTTTGAATT
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