CN189261

Overview
NameCN189261
Unique NameCN189261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9707 contig Csv1_Contig9707:187..956. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.330e-30
Identity = 71/165 (43.03%), Postives = 109/165 (66.06%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKK---ACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 588
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T++RY+K      + + P     A     QQE  KL+ +   +Q   R++LGE L  L+ KEL++LE +L+  + ++R+ + + +L ++  ++ +E  L   N  LR R+++
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLAD 177          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.573e-30
Identity = 66/158 (41.77%), Postives = 108/158 (68.35%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRAR 579
            N T+RQVTF KRRNGLLKKA+ELSVLCDAEVALIVFS RG+LYE+A+ S + TI+RY+    ++    ++ + + +  + +A  L +++  ++   R +LGE L   + +EL +LE +LE+ +  +R +K ++L  ++  + ++E++L+ DN  LR +
Sbjct:   13 NPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTKENIGNKTV-QQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREK 169          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.250e-29
Identity = 71/162 (43.83%), Postives = 103/162 (63.58%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 588
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ ++S +  T+DRY+K    S    +      +   +E  KL+ +   +Q   R++LGE L  LN KEL+ LE +L+  + +VRS K + +L ++  ++ +E  L   N  L  ++ +
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDD 174          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 1.250e-29
Identity = 70/167 (41.92%), Postives = 105/167 (62.87%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS----VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENE 594
            N  NRQVTF KRR GLLKKA E+SVLCDAEV+LIVFS +G+L+EY++ S    V    +RY  A      P S   A T  +  E ++L+ +I  ++   RH LGE L  ++ K+L+NLE +LE  +  +RS+KN+++   +  ++++E ++Q +N  L  +I E E
Sbjct:   13 NKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTN-WSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERE 178          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.633e-29
Identity = 72/164 (43.90%), Postives = 108/164 (65.85%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVRATIDRYKKACADSSNPGSITEANTQFY----QQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARI 582
            N  NRQVTF KRRNGLLKKAYELSVLCDAEVALIVFS+RG+LYE+ + +S+  T++RY+K C   +  G++T           QQE  KL+ +   +Q   R+++GE L  L+ K+L+ LE +L+  + ++RS + + +L ++  ++++E  L   N  LR R+
Sbjct:   13 NKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQK-CNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRM 175          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.785e-29
Identity = 66/163 (40.49%), Postives = 111/163 (68.10%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSS---NPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARIS 585
            NT NRQVTF KRR GL+KKA EL++LCDA+V LIVFS  GRLY+++++S+++ I+RY++A  +     NP S      +F+Q+E T LR+Q++ + + NR +LGE +S    ++L+ L+ ++E  +  +R+KK+++L  EI  + ++   +Q +N  LR + +
Sbjct:   13 NTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEEHCRLLNPMS----EAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKKFN 171          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.638e-29
Identity = 77/217 (35.48%), Postives = 122/217 (56.22%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK-ACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXXGGGHVYEPAASQ----PYDRNFLPVNLLEPNHQYARQD 738
            N  NRQVTF KRR GLLKKA+E+SVLCDAEVAL+VFS +G+L+EY+ +S +   ++RY++ + A+       ++ NT  +  E  +L+ +I  ++   RH LGE L  ++ KEL+NLE +L+  +  +RS+KN+++   I  ++++E  +Q  N  L  +I E E+              G ++  P   Q    PY  +  P   L     Y  +D
Sbjct:   13 NKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTN-WSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNHGHNMPPPPPPQQIQHPYMLSHQPSPFLNMGGLYQEED 228          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.638e-29
Identity = 78/222 (35.14%), Postives = 122/222 (54.95%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKK-ACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXXGGGHVYEPAASQ------PYDRNFLPVNLLEPNHQYARQDDQA 747
            N  NRQVTF KRR GLLKKA+E+SVLCDAEVAL+VFS +G+L+EY+ +S +   ++RY++ + A+       ++ NT  +  E  +L+ +I  ++   RH LGE L  ++ KEL+NLE +L+  +  +R++KN+++   I  ++K+E  +Q  N  L  +I E E+              G ++  P   Q      PY  +  P   L     Y   D  A
Sbjct:   13 NKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTN-WSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNQGHNMPPPLPPQQHQIQHPYMLSHQPSPFLNMGGLYQEDDPMA 233          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.751e-29
Identity = 67/162 (41.36%), Postives = 109/162 (67.28%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISE 588
            N  +RQVTF KRRNGLLKKAYELS+LCDAEVAL++FS  GRLY+++++S +  T++RY++    S +  + T    Q   QE   L+  +  +Q   R++LGE L+ L   EL+ LE+++ + + ++RS+K ++LL E+  ++++E  LQ+ N  L+ ++ E
Sbjct:   13 NKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDE 174          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.751e-29
Identity = 61/146 (41.78%), Postives = 103/146 (70.55%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREI 543
            N T+RQVTF KRR+GL KKA ELS+LCDAEV L+VFSS  RLY++A++S+++ I+RY +   D     +   +  + +QQEA  LR+Q+  +Q  +R +LG+ LS L+ ++L+NLE++LE  +  +R +K+ +++ +I+ + ++ +
Sbjct:   13 NATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSMKSIIERYNETKEDPHQTMN-ASSEAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRKVV 157          
The following BLAST results are available for this feature:
BLAST of CN189261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
SEP3_ARATH7.330e-3043.03Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MAD50_ORYSJ9.573e-3041.77MADS-box transcription factor 50 OS=Oryza sativa s... [more]
SEP1_ARATH1.250e-2943.83Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
CAL_ARATH1.250e-2941.92Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
MTF1_PEA1.633e-2943.90MADS-box transcription factor 1 OS=Pisum sativum G... [more]
MAD25_ORYSJ2.785e-2940.49MADS-box transcription factor 25 OS=Oryza sativa s... [more]
AP1_SINAL3.638e-2935.48Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AP1_ARATH3.638e-2935.14Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
MAD34_ORYSJ4.751e-2941.36MADS-box transcription factor 34 OS=Oryza sativa s... [more]
MAD23_ORYSJ4.751e-2941.78MADS-box transcription factor 23 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189261 ID=CN189261; Name=CN189261; organism=Citrus sinensis; type=EST; length=770bp
GCGGGTAAGTTACCAGCAACCATGGAGTTTCCAAAACAAAACCCTTAAAG
CTCAAGCCAAAGCAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGA
TCGAGAACACAACAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGA
TTGTTGAAGAAAGCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGC
TCTCATCGTCTTCTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACA
GTGTCAGAGCAACAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCT
AACCCAGGATCTATTACTGAAGCTAACACTCAGTTTTACCAGCAAGAAGC
CACAAAACTACGAAGACAAATCCGGGAGATTCAGAATTTGAACAGGCACA
TTCTGGGTGAGGCCCTCAGCACTTTAAACTTTAAGGAGCTCAAGAACCTT
GAGGCAAGACTTGAGAAGGGAATCGGCAGAGTCAGATCCAAGAAGAACGA
AATGTTATTAGCTGAAATCGAGTTCATGGAGAAGAGGGAAATTCAGCTTC
AAAATGATAACATGTACCTGAGAGCAAGGATATCTGAAAATGAGAGAGCA
CAACAAGAACGGCAATCAGAAAGCATGATGCAGCAAGGAGGAGGGCATGT
GTACGAGCCCGCGGCTTCACAGCCCTATGACCGAAACTTCCTTCCTGTAA
ACCTCTTGGAACCCAATCACCAGTACGCTCGCCAAGACGATCAGGCCCCC
TCTTCAACTTGTTTTGAATT
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