CN189259

Overview
NameCN189259
Unique NameCN189259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:20..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_PROMA (Phosphoglycerate kinase OS=Prochlorococcus marinus GN=pgk PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.524e-50
Identity = 96/134 (71.64%), Postives = 112/134 (83.58%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 407
            LP+DVV+AD F+ DA+S++V   +IP+GWMGLD+G +++K F +AL   KT+IWNGPMGVFEFDKFA GT +I+  LAELS KG  TIIGGGDSVAAVEK GLA KMSHISTGGGASLELLEGK LPGV ALDD
Sbjct:  267 LPSDVVLADNFSPDASSQMVQIDSIPEGWMGLDIGKESVKLFQDALADCKTVIWNGPMGVFEFDKFANGTNSISTTLAELSAKGCCTIIGGGDSVAAVEKAGLASKMSHISTGGGASLELLEGKVLPGVAALDD 400          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_PROMT (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=pgk PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.214e-50
Identity = 98/135 (72.59%), Postives = 110/135 (81.48%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LPTDVV+AD F+ DANSK+    AI +GWMGLD+G ++++ F  AL   KT+IWNGPMGVFEF+KFA GT AIA  LAELS +G  TIIGGGDSVAAVEK GLA KMSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  267 LPTDVVLADNFSPDANSKLSKVDAISEGWMGLDIGSESVELFQNALKDCKTVIWNGPMGVFEFEKFANGTNAIANTLAELSAQGCCTIIGGGDSVAAVEKAGLAKKMSHISTGGGASLELLEGKVLPGVSALDDA 401          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_SYNJB (Phosphoglycerate kinase OS=Synechococcus sp. GN=pgk PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.422e-50
Identity = 93/135 (68.89%), Postives = 113/135 (83.70%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LP DVV+AD+F  DA ++ V   AIP+ WMGLD+GP+++K+F  AL   +T++WNGPMGVFEFD+FA GTEAIA+ LA+L+  G TTIIGGGDSVAAVEKVGLADKM+HISTGGGASLELLEGK LPG+ AL +A
Sbjct:  278 LPVDVVVADRFDKDAQAQTVSIHAIPEDWMGLDIGPESVKAFQSALQGCQTVVWNGPMGVFEFDRFALGTEAIARTLADLTQAGATTIIGGGDSVAAVEKVGLADKMTHISTGGGASLELLEGKVLPGIAALTEA 412          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_PROMS (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain AS9601) GN=pgk PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.231e-49
Identity = 102/136 (75.00%), Postives = 111/136 (81.62%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LPTDVV+AD+F+ DANSK+    AI   WMGLD+GPD+IK F  AL   KTIIWNGPMGVFEFDKFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  267 LPTDVVLADEFSPDANSKISQIDAISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFADGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGKH_CHLRE (Phosphoglycerate kinase, chloroplastic OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.607e-49
Identity = 94/134 (70.15%), Postives = 113/134 (84.33%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 407
            LPTDVV+ADKF A+AN++ VP TAIPDGWMGLD+GPD++K+F++AL   KT++WNGPMGVFEF +    T +IA  LA L+ KG  TIIGGGDSVAAVE+ G+A+KMSHISTGGGASLELLEGK LPGV ALD+
Sbjct:  327 LPTDVVVADKFDANANTQTVPITAIPDGWMGLDIGPDSVKTFNDALADAKTVVWNGPMGVFEFPQVRQRTVSIANTLAGLTPKGCITIIGGGDSVAAVEQAGVAEKMSHISTGGGASLELLEGKVLPGVAALDE 460          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_PROM9 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=pgk PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.741e-49
Identity = 101/136 (74.26%), Postives = 111/136 (81.62%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LPTDVV+AD+F+ DANSK+    +I   WMGLD+GPD+IK F  AL   KTIIWNGPMGVFEFDKFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  267 LPTDVVLADEFSPDANSKISQIDSISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFADGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_PROM2 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=pgk PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.741e-49
Identity = 101/136 (74.26%), Postives = 111/136 (81.62%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LPTDVV+AD+F+ DANSK+    +I   WMGLD+GPD+IK F  AL   KTIIWNGPMGVFEFDKFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  267 LPTDVVLADEFSPDANSKISRIDSISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFAEGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_PROM1 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=pgk PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.741e-49
Identity = 97/135 (71.85%), Postives = 109/135 (80.74%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LPTDVV+AD F+ DANSK+    AI +GWMGLD+G ++++ F  AL   KT+IWNGPMGVFEF+KFA GT AIA  LAELS +G  TIIGGGDSVAAVEK GLA  MSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  267 LPTDVVLADNFSPDANSKLSKVDAISEGWMGLDIGSESVELFQNALKDCKTVIWNGPMGVFEFEKFANGTNAIANTLAELSAQGCCTIIGGGDSVAAVEKAGLAKNMSHISTGGGASLELLEGKVLPGVSALDDA 401          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_TRIEI (Phosphoglycerate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=pgk PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.965e-47
Identity = 93/134 (69.40%), Postives = 111/134 (82.84%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 407
            LPTDVV+ADKF  +AN++ V   AIPDGWMGLD+GP++ K F +AL   KT+IWNGPMGVFE +KFA GTEAIA+ LA+   +   TIIGGGDSVAAVE++GL +KMSHISTGGGASLELLEGK LPG++ALDD
Sbjct:  266 LPTDVVVADKFDPEANTQTVSIEAIPDGWMGLDIGPESAKVFQDALADCKTVIWNGPMGVFEMEKFAKGTEAIAQTLAD--KQDAITIIGGGDSVAAVEQLGLGEKMSHISTGGGASLELLEGKKLPGIVALDD 397          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_PROM0 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=pgk PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.566e-47
Identity = 98/136 (72.06%), Postives = 109/136 (80.15%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LPTDVV+A++F+ DA SK+    +I   WMGLD+GPD+IK F  AL   KTIIWNGPMGVFEFDKFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV AL+DA
Sbjct:  267 LPTDVVLANEFSPDAESKISQIDSISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFADGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKILPGVAALNDA 402          
The following BLAST results are available for this feature:
BLAST of CN189259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_PROMA5.524e-5071.64Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROMT7.214e-5072.59Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_SYNJB9.422e-5068.89Phosphoglycerate kinase OS=Synechococcus sp. GN=pg... [more]
PGK_PROMS1.231e-4975.00Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGKH_CHLRE1.607e-4970.15Phosphoglycerate kinase, chloroplastic OS=Chlamydo... [more]
PGK_PROM92.741e-4974.26Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM22.741e-4974.26Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM12.741e-4971.85Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_TRIEI1.965e-4769.40Phosphoglycerate kinase OS=Trichodesmium erythraeu... [more]
PGK_PROM02.566e-4772.06Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189259 ID=CN189259; Name=CN189259; organism=Citrus sinensis; type=EST; length=713bp
GCGGGCTCCCTACTGATGTTGTTATTGCTGACAAGTTTGCTGCTGATGCC
AACAGCAAGGTGGTGCCAGCAACGGCAATTCCAGATGGTTGGATGGGCTT
GGATGTTGGACCTGATGCCATCAAGTCATTCAGTGAAGCTTTGGATACTA
CTAAAACCATCATCTGGAATGGACCTATGGGTGTGTTTGAATTTGATAAA
TTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCAGCGG
GAAGGGAGTGACCACAATCATTGGAGGAGGTGACTCAGTTGCAGCCGTAG
AGAAGGTTGGTCTGGCTGACAAGATGAGCCATATCTCCACTGGAGGTGGA
GCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCCCTGGTGTGCTTGCTCT
TGATGATGCTTAAACCCAGTTCCTGGACTTTCCTTTTTTAAATGTGCCAT
TTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCCAGAGTGGATAAAAGTT
AAACTTTATCATTAGAGTTGGTTTTGTAGATGCTGTAAGAGTAAAAATAA
ATTCTTTCTCACAGGCATCAATGGTGATGCATTTTTCTGGATTTGATCCC
ATTTTGGAACATTGTGATGGTAAGGCTATAAGTTTCCTGAAGTCAAGTTC
TTGTTCCTTTCTGATCACAATGAGCCGTTGATGATTGTTAGATAATGCAT
GAATCCTGGCACT
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