CN189259

Overview
NameCN189259
Unique NameCN189259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:20..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_MYCA9 (Phosphoglycerate kinase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.276e-38
Identity = 78/135 (57.78%), Postives = 98/135 (72.59%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLPGVLALDD 407
            LP D+V AD+FAAD+ S++V A AIPD  MGLD+GP+++K F+  L   KTI WNGPMGVFEF  FAAGT  +A+ +   + KG  +++GGGDS AAV  + L D   SHISTGGGASLE LEGK LPG+  L+D
Sbjct:  278 LPMDIVAADEFAADSPSEIVAADAIPDSKMGLDIGPESVKRFAAVLSNAKTIFWNGPMGVFEFPAFAAGTRGVAEAIIAATEKGAFSVVGGGDSAAAVRALDLPDDGFSHISTGGGASLEYLEGKVLPGIDVLED 412          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_FRAAA (Phosphoglycerate kinase OS=Frankia alni (strain ACN14a) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.276e-38
Identity = 82/134 (61.19%), Postives = 99/134 (73.88%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 404
            LPTDVV+AD+FAADA + VVPA  I DGW+GLD+GP +   F+  LD   T+ WNGPMGVFE   FAAGT  +AK +A  +G G  +++GGGDS AAV  +G+  D  SHISTGGGASLE LEGKTLPG+ ALD
Sbjct:  269 LPTDVVVADRFAADAQTAVVPADGIGDGWLGLDIGPASTALFAGRLDGAATVFWNGPMGVFELAPFAAGTRGVAKAIA--AGDGF-SVVGGGDSAAAVRTLGIPEDAFSHISTGGGASLEYLEGKTLPGLAALD 399          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_PROA2 (Phosphoglycerate kinase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 407
            LP DV+ A  F+ADA +  VP  +IP+  MGLD+GP  I ++S  +   +TI+WNGPMGVFE D FA GT AIA  LA+ + KG  +IIGGGDS AAV K GL   ++HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  264 LPEDVIAASAFSADAETATVPIDSIPETMMGLDIGPKTIDTYSREILKARTIVWNGPMGVFEIDAFATGTIAIAHALADATAKGAISIIGGGDSAAAVMKAGLESGITHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_CORU7 (Phosphoglycerate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 77/133 (57.89%), Postives = 97/133 (72.93%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLPGVLAL 401
            LPTDVV A+ F+ DA  K V  + IP GWMGLD+GP++  +F+  L   KT+ WNGPMGVFEF  FAAGT+A+A+ + + +  G  +++GGGDS AAV  +GL +K  SHISTGGGASLE LEGKTLPGV  L
Sbjct:  269 LPTDVVAAENFSKDAEHKAVGLSEIPSGWMGLDIGPESADAFAAVLGEAKTVFWNGPMGVFEFPAFAAGTKAVAEAIIKATDAGAFSVVGGGDSAAAVRTLGLDEKGFSHISTGGGASLEFLEGKTLPGVEVL 401          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_MYCGI (Phosphoglycerate kinase OS=Mycobacterium gilvum (strain PYR-GCK) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.177e-38
Identity = 76/134 (56.72%), Postives = 99/134 (73.88%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 404
            LP D+V+A+KF+AD+  + V A  IPD  MGLD+GP++++ FS  L   KTI WNGPMGVFEF  FAAGT+ +A+ +   +GKG  +++GGGDS AAV ++GL  D  SHISTGGGASLE LEGK LPG+  L+
Sbjct:  269 LPVDIVVAEKFSADSEPQTVAADKIPDDKMGLDIGPESVRRFSALLSNAKTIFWNGPMGVFEFPAFAAGTKGVAEAIIGATGKGAFSVVGGGDSAAAVRQLGLPEDGFSHISTGGGASLEYLEGKELPGIEVLN 402          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_CLOTE (Phosphoglycerate kinase OS=Clostridium tetani GN=pgk PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.177e-38
Identity = 78/134 (58.21%), Postives = 98/134 (73.13%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 407
            LP D V A+KFA DA + +     I +G+MGLD+GP   K +S+ + + KT++WNGPMGVFEF+KFA GT  +AK +AE      TTIIGGGDS AAV ++G  DKM+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  270 LPVDNVAAEKFAEDAEAIITEDQNIKEGYMGLDIGPKTSKLYSQEVQSAKTVVWNGPMGVFEFEKFAKGTIEVAKAMAE---SQATTIIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIAALND 400          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_FRASN (Phosphoglycerate kinase OS=Frankia sp. (strain EAN1pec) GN=pgk PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.844e-38
Identity = 82/134 (61.19%), Postives = 100/134 (74.63%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 404
            LPTDVV+AD+FAADA + VV A AIPDGW+GLD+GP +  +F+  +    TI WNGPMGVFEF  FA GT  +A+ +A  SG G  +++GGGDS AAV  +G+  D  SHISTGGGASLE LEGKTLPG+ ALD
Sbjct:  269 LPTDVVVADRFAADAETAVVAADAIPDGWLGLDIGPASTAAFARVVAGAATIFWNGPMGVFEFAPFAEGTRGVAEAVA--SGGGF-SVVGGGDSAAAVRILGIPEDDFSHISTGGGASLEYLEGKTLPGLAALD 399          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_NEUCR (Phosphoglycerate kinase OS=Neurospora crassa GN=pgk-1 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 76/135 (56.30%), Postives = 97/135 (71.85%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSK-VVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 407
            LP D  IADKF  DAN+        IPDGWMGLD G +++K F++A++ ++TI+WNGP GVFEFDKFA GT+A      + + +G T IIGGGD+     K G+ DK+SH+STGGGASLELLEGK LPGV+AL +
Sbjct:  282 LPVDFTIADKFDKDANTGYATDKDGIPDGWMGLDCGEESVKLFTQAINESQTILWNGPAGVFEFDKFAKGTKATLDACVKAAEEGRTVIIGGGDTATVAAKYGVEDKLSHVSTGGGASLELLEGKALPGVVALSE 416          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_BEUC1 (Phosphoglycerate kinase OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=pgk PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 78/135 (57.78%), Postives = 100/135 (74.07%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLPGVLALDD 407
            LPTD+V A+ FAADA  +VV A AIP   +GLD+GP++ ++F+  +   KT++WNGPMGVFEFD FAAGT A+A+ L + +  G  TI+GGGDS AAV  +G  +   SHISTGGGASLE LEGKTLPG+  L+D
Sbjct:  265 LPTDIVAAEAFAADAPHQVVAADAIPADSIGLDIGPESGEAFAAVIRGAKTVVWNGPMGVFEFDAFAAGTRAVAQGLTDATAAGAFTIVGGGDSAAAVRSLGFDEAGFSHISTGGGASLEFLEGKTLPGLAVLED 399          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_BACSU (Phosphoglycerate kinase OS=Bacillus subtilis GN=pgk PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 76/134 (56.72%), Postives = 100/134 (74.63%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 407
            +P DV++AD F+ DAN K+VP + IP     +D+G    +++++ +  +K ++WNGPMGVFE D FA GT+A+A+ LAE   K   ++IGGGDS AAVEK GLADKMSHISTGGGASLE +EGK LPGV AL+D
Sbjct:  262 MPEDVLVADDFSNDANVKIVPISEIPSDLEAIDIGTKTRETYADVIKNSKLVVWNGPMGVFEIDLFAQGTKAVAEALAE--AKDTYSVIGGGDSAAAVEKFGLADKMSHISTGGGASLEFMEGKELPGVAALND 393          
The following BLAST results are available for this feature:
BLAST of CN189259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_MYCA91.276e-3857.78Phosphoglycerate kinase OS=Mycobacterium abscessus... [more]
PGK_FRAAA1.276e-3861.19Phosphoglycerate kinase OS=Frankia alni (strain AC... [more]
PGK_PROA21.667e-3858.21Phosphoglycerate kinase OS=Prosthecochloris aestua... [more]
PGK_CORU71.667e-3857.89Phosphoglycerate kinase OS=Corynebacterium urealyt... [more]
PGK_MYCGI2.177e-3856.72Phosphoglycerate kinase OS=Mycobacterium gilvum (s... [more]
PGK_CLOTE2.177e-3858.21Phosphoglycerate kinase OS=Clostridium tetani GN=p... [more]
PGK_FRASN2.844e-3861.19Phosphoglycerate kinase OS=Frankia sp. (strain EAN... [more]
PGK_NEUCR3.714e-3856.30Phosphoglycerate kinase OS=Neurospora crassa GN=pg... [more]
PGK_BEUC13.714e-3857.78Phosphoglycerate kinase OS=Beutenbergia cavernae (... [more]
PGK_BACSU3.714e-3856.72Phosphoglycerate kinase OS=Bacillus subtilis GN=pg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189259 ID=CN189259; Name=CN189259; organism=Citrus sinensis; type=EST; length=713bp
GCGGGCTCCCTACTGATGTTGTTATTGCTGACAAGTTTGCTGCTGATGCC
AACAGCAAGGTGGTGCCAGCAACGGCAATTCCAGATGGTTGGATGGGCTT
GGATGTTGGACCTGATGCCATCAAGTCATTCAGTGAAGCTTTGGATACTA
CTAAAACCATCATCTGGAATGGACCTATGGGTGTGTTTGAATTTGATAAA
TTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCAGCGG
GAAGGGAGTGACCACAATCATTGGAGGAGGTGACTCAGTTGCAGCCGTAG
AGAAGGTTGGTCTGGCTGACAAGATGAGCCATATCTCCACTGGAGGTGGA
GCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCCCTGGTGTGCTTGCTCT
TGATGATGCTTAAACCCAGTTCCTGGACTTTCCTTTTTTAAATGTGCCAT
TTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCCAGAGTGGATAAAAGTT
AAACTTTATCATTAGAGTTGGTTTTGTAGATGCTGTAAGAGTAAAAATAA
ATTCTTTCTCACAGGCATCAATGGTGATGCATTTTTCTGGATTTGATCCC
ATTTTGGAACATTGTGATGGTAAGGCTATAAGTTTCCTGAAGTCAAGTTC
TTGTTCCTTTCTGATCACAATGAGCCGTTGATGATTGTTAGATAATGCAT
GAATCCTGGCACT
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