CN189258

Overview
NameCN189258
Unique NameCN189258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK1_PIG (Phosphoglycerate kinase 1 OS=Sus scrofa GN=PGK1 PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.885e-31
Identity = 66/122 (54.10%), Postives = 87/122 (71.31%), Query Frame = -3
Query:  331 NSKVVPATA---IPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 687
            N+K+  AT    IP GWMGLD GP++ K +SEA+   K I+WNGP+GVFE++ FA GT+A+  ++ + + +G  TIIGGGD+     K    DK+SH+STGGGASLELLEGK LPGV AL +
Sbjct:  295 NAKIGQATVASGIPAGWMGLDCGPESSKKYSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSN 416          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_CORGL (Phosphoglycerate kinase OS=Corynebacterium glutamicum GN=pgk PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.462e-31
Identity = 66/120 (55.00%), Postives = 85/120 (70.83%), Query Frame = -3
Query:  337 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAE-LSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLAL 690
            A  ++V   +IP+GWM LD+GP+++K+F E L T KTI WNGPMGVFEF  F+ GT  IA+ + +  +G    +++GGGDS A+V  +GL  D  SHISTGGGASLE LEGK LPGV  L
Sbjct:  284 AEKQIVDLDSIPEGWMSLDIGPESVKNFGEVLSTAKTIFWNGPMGVFEFAAFSEGTRGIAQAIIDATAGNDAFSVVGGGDSAASVRVLGLNEDGFSHISTGGGASLEYLEGKELPGVAIL 403          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_CORGB (Phosphoglycerate kinase OS=Corynebacterium glutamicum (strain R) GN=pgk PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.462e-31
Identity = 66/120 (55.00%), Postives = 85/120 (70.83%), Query Frame = -3
Query:  337 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAE-LSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLAL 690
            A  ++V   +IP+GWM LD+GP+++K+F E L T KTI WNGPMGVFEF  F+ GT  IA+ + +  +G    +++GGGDS A+V  +GL  D  SHISTGGGASLE LEGK LPGV  L
Sbjct:  284 AEKQIVDLDSIPEGWMSLDIGPESVKNFGEVLSTAKTIFWNGPMGVFEFAAFSEGTRGIAQAIIDATAGNDAFSVVGGGDSAASVRVLGLNEDGFSHISTGGGASLEYLEGKELPGVAIL 403          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK2_MOUSE (Phosphoglycerate kinase 2 OS=Mus musculus GN=Pgk2 PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 2.462e-31
Identity = 67/122 (54.92%), Postives = 86/122 (70.49%), Query Frame = -3
Query:  331 NSKVVPAT---AIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 687
            N+KV  AT    IP GWMGLD GP++IK  ++ +   K I+WNGP+GVFE+D FA GT+A+  ++ + +  G  TIIGGGD+     K G  DK+SH+STGGGASLELLEGK LPGV AL +
Sbjct:  295 NAKVGQATIESGIPSGWMGLDCGPESIKINAQIVAQAKLIVWNGPIGVFEWDAFAKGTKALMDEVVKATSNGCVTIIGGGDTATCCAKWGTEDKVSHVSTGGGASLELLEGKILPGVEALSN 416          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_LEPBJ (Phosphoglycerate kinase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=pgk PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.216e-31
Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = -3
Query:  337 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 690
            A +K V    I DGWMG+D+G   + ++ + +    TI WNGPMGVFE DKFA GT AIAK +++   K   T++GGGDS+AA+ K  +ADK++HISTGGGASLE +EG+ LPGV AL
Sbjct:  276 AKTKSVDKMGILDGWMGMDIGSKTVSNYEKIIKNAGTIFWNGPMGVFEMDKFAGGTMAIAKAISKSKAK---TVVGGGDSIAAINKAKVADKITHISTGGGASLEFMEGRKLPGVEAL 390          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_KLULA (Phosphoglycerate kinase OS=Kluyveromyces lactis GN=PGK PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.216e-31
Identity = 68/121 (56.20%), Postives = 83/121 (68.60%), Query Frame = -3
Query:  331 ANSKVVP-ATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 690
            AN+KVV     IP GW GLD GP++ K+F+  +   KTI+WNGP GVFEF  FA GTEA+   +   S  G T IIGGGD+    +K G+ DK+SH+STGGGASLELLEGK LPGV  L +
Sbjct:  294 ANTKVVTDKEGIPSGWQGLDNGPESRKAFAATVAEAKTIVWNGPPGVFEFAPFAKGTEALLDAVVASSQAGNTVIIGGGDTATVAKKYGVVDKISHVSTGGGASLELLEGKELPGVTFLSN 414          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_CLOBB (Phosphoglycerate kinase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=pgk PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.216e-31
Identity = 67/110 (60.91%), Postives = 80/110 (72.73%), Query Frame = -3
Query:  331 IPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 660
            IP G MGLD+GP     ++ A+   KT+IWNGPMGVFEF+ F  GT A+AK +A+      TTIIGGGDS AAV  +G  DKM+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  290 IPTGNMGLDIGPKTETVYANAIKDAKTVIWNGPMGVFEFENFNKGTIAVAKAMAD---SNATTIIGGGDSAAAVNILGFGDKMTHISTGGGASLEFLEGKVLPGISALND 396          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_CLOB6 (Phosphoglycerate kinase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=pgk PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.216e-31
Identity = 65/110 (59.09%), Postives = 81/110 (73.64%), Query Frame = -3
Query:  331 IPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 660
            I +G+MGLD+GP   K +S+A+ + KT++WNGPMGVFEF  FA GT  +AK +A+       TIIGGGDS AAV  +G  D M+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  291 IGEGYMGLDIGPKTAKIYSDAIKSAKTVVWNGPMGVFEFKSFANGTIEVAKAMAD---SDAVTIIGGGDSAAAVNILGFGDNMTHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_FRAAA (Phosphoglycerate kinase OS=Frankia alni (strain ACN14a) GN=pgk PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31
Identity = 70/120 (58.33%), Postives = 85/120 (70.83%), Query Frame = -3
Query:  334 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 690
            A + VVPA  I DGW+GLD+GP +   F+  LD   T+ WNGPMGVFE   FAAGT  +AK +A  +G G  +++GGGDS AAV  +G+  D  SHISTGGGASLE LEGKTLPG+ ALD
Sbjct:  283 AQTAVVPADGIGDGWLGLDIGPASTALFAGRLDGAATVFWNGPMGVFELAPFAAGTRGVAKAIA--AGDGF-SVVGGGDSAAAVRTLGIPEDAFSHISTGGGASLEYLEGKTLPGLAALD 399          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_EXISA (Phosphoglycerate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=pgk PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31
Identity = 66/115 (57.39%), Postives = 85/115 (73.91%), Query Frame = -3
Query:  331 VPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 675
            V   +IP   MGLD+GP  ++ +++A+  +K ++WNGPMGVFE DK+A GT+ +A+ LA+       +IIGGGDS AA  K GLADKMSHISTGGGASLE +EGK LPGV AL+D
Sbjct:  282 VDIDSIPADHMGLDIGPKTVELYADAIRESKLVVWNGPMGVFELDKYANGTKGVAQALAD---SDAYSIIGGGDSAAAAAKFGLADKMSHISTGGGASLEFMEGKKLPGVEALND 393          
The following BLAST results are available for this feature:
BLAST of CN189258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK1_PIG1.885e-3154.10Phosphoglycerate kinase 1 OS=Sus scrofa GN=PGK1 PE... [more]
PGK_CORGL2.462e-3155.00Phosphoglycerate kinase OS=Corynebacterium glutami... [more]
PGK_CORGB2.462e-3155.00Phosphoglycerate kinase OS=Corynebacterium glutami... [more]
PGK2_MOUSE2.462e-3154.92Phosphoglycerate kinase 2 OS=Mus musculus GN=Pgk2 ... [more]
PGK_LEPBJ3.216e-3154.24Phosphoglycerate kinase OS=Leptospira borgpetersen... [more]
PGK_KLULA3.216e-3156.20Phosphoglycerate kinase OS=Kluyveromyces lactis GN... [more]
PGK_CLOBB3.216e-3160.91Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CLOB63.216e-3159.09Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_FRAAA4.200e-3158.33Phosphoglycerate kinase OS=Frankia alni (strain AC... [more]
PGK_EXISA4.200e-3157.39Phosphoglycerate kinase OS=Exiguobacterium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189258 ID=CN189258; Name=CN189258; organism=Citrus sinensis; type=EST; length=692bp
TTTTTCAGAACAATGGAATATTGTAGTGCCAGGATTCATGCATTATCTAA
CAATCATCAACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCA
GGAAACTTATAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCA
GAAAAATGCATCACCATTGATGCCTGTGAGAAAGAATTTATTTTTACTCT
TACAGCATCTACAAAACCAACTCTAATGATAAAGTTTAACTTTTATCCAC
TCTGGGCTGACAACCAGCCACACATACAACTCTGGAAATGGCACATTTAA
AAAAGGAAAGTCCAGGAACTGGGTTTAAGCATCATCAAGAGCAAGCACAC
CAGGGAGTGTTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTG
GAGATATGGCTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCAAC
TGAGTCACCTCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCG
CAAGCTTCTTGGCAATTGCCTCAGTGCCAGCAGCAAATTTATCAAATTCA
AACACACCCATAGGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGC
TTCACTGAATGACTTGATGGCATCAGGTCCAACATCCAAGCCCATCCAAC
CATCTGGAATTGCCGTTGCTGGCACCACCTTGCTGTTGGCAT
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