CN189258

Overview
NameCN189258
Unique NameCN189258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_PROMA (Phosphoglycerate kinase OS=Prochlorococcus marinus GN=pgk PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.313e-44
Identity = 87/120 (72.50%), Postives = 100/120 (83.33%), Query Frame = -3
Query:  331 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 690
            A+S++V   +IP+GWMGLD+G +++K F +AL   KT+IWNGPMGVFEFDKFA GT +I+  LAELS KG  TIIGGGDSVAAVEK GLA KMSHISTGGGASLELLEGK LPGV ALDD
Sbjct:  281 ASSQMVQIDSIPEGWMGLDIGKESVKLFQDALADCKTVIWNGPMGVFEFDKFANGTNSISTTLAELSAKGCCTIIGGGDSVAAVEKAGLASKMSHISTGGGASLELLEGKVLPGVAALDD 400          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_SYNJB (Phosphoglycerate kinase OS=Synechococcus sp. GN=pgk PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.326e-44
Identity = 84/121 (69.42%), Postives = 102/121 (84.30%), Query Frame = -3
Query:  328 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 690
            A ++ V   AIP+ WMGLD+GP+++K+F  AL   +T++WNGPMGVFEFD+FA GTEAIA+ LA+L+  G TTIIGGGDSVAAVEKVGLADKM+HISTGGGASLELLEGK LPG+ AL +A
Sbjct:  292 AQAQTVSIHAIPEDWMGLDIGPESVKAFQSALQGCQTVVWNGPMGVFEFDRFALGTEAIARTLADLTQAGATTIIGGGDSVAAVEKVGLADKMTHISTGGGASLELLEGKVLPGIAALTEA 412          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_PROMT (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=pgk PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.259e-43
Identity = 88/121 (72.73%), Postives = 98/121 (80.99%), Query Frame = -3
Query:  328 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 690
            ANSK+    AI +GWMGLD+G ++++ F  AL   KT+IWNGPMGVFEF+KFA GT AIA  LAELS +G  TIIGGGDSVAAVEK GLA KMSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  281 ANSKLSKVDAISEGWMGLDIGSESVELFQNALKDCKTVIWNGPMGVFEFEKFANGTNAIANTLAELSAQGCCTIIGGGDSVAAVEKAGLAKKMSHISTGGGASLELLEGKVLPGVSALDDA 401          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_PROMS (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain AS9601) GN=pgk PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.804e-43
Identity = 92/122 (75.41%), Postives = 98/122 (80.33%), Query Frame = -3
Query:  328 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 690
            ANSK+    AI   WMGLD+GPD+IK F  AL   KTIIWNGPMGVFEFDKFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  281 ANSKISQIDAISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFADGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_PROM1 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=pgk PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.783e-43
Identity = 87/121 (71.90%), Postives = 97/121 (80.17%), Query Frame = -3
Query:  328 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 690
            ANSK+    AI +GWMGLD+G ++++ F  AL   KT+IWNGPMGVFEF+KFA GT AIA  LAELS +G  TIIGGGDSVAAVEK GLA  MSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  281 ANSKLSKVDAISEGWMGLDIGSESVELFQNALKDCKTVIWNGPMGVFEFEKFANGTNAIANTLAELSAQGCCTIIGGGDSVAAVEKAGLAKNMSHISTGGGASLELLEGKVLPGVSALDDA 401          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_PROM9 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=pgk PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.247e-43
Identity = 91/122 (74.59%), Postives = 98/122 (80.33%), Query Frame = -3
Query:  328 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 690
            ANSK+    +I   WMGLD+GPD+IK F  AL   KTIIWNGPMGVFEFDKFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  281 ANSKISQIDSISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFADGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_PROM2 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=pgk PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.247e-43
Identity = 91/122 (74.59%), Postives = 98/122 (80.33%), Query Frame = -3
Query:  328 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 690
            ANSK+    +I   WMGLD+GPD+IK F  AL   KTIIWNGPMGVFEFDKFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  281 ANSKISRIDSISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFAEGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGKH_CHLRE (Phosphoglycerate kinase, chloroplastic OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.247e-43
Identity = 83/120 (69.17%), Postives = 100/120 (83.33%), Query Frame = -3
Query:  331 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 690
            AN++ VP TAIPDGWMGLD+GPD++K+F++AL   KT++WNGPMGVFEF +    T +IA  LA L+ KG  TIIGGGDSVAAVE+ G+A+KMSHISTGGGASLELLEGK LPGV ALD+
Sbjct:  341 ANTQTVPITAIPDGWMGLDIGPDSVKTFNDALADAKTVVWNGPMGVFEFPQVRQRTVSIANTLAGLTPKGCITIIGGGDSVAAVEQAGVAEKMSHISTGGGASLELLEGKVLPGVAALDE 460          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_PROMP (Phosphoglycerate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=pgk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.021e-42
Identity = 91/122 (74.59%), Postives = 95/122 (77.87%), Query Frame = -3
Query:  328 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 690
            A SKV    AI   WMGLD+GP +IK F  AL   KTIIWNGPMGVFEFDKFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL DA
Sbjct:  281 AESKVSQIDAISGDWMGLDIGPQSIKVFQNALAECKTIIWNGPMGVFEFDKFAEGTNAIATTLADLSSFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALKDA 402          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_PROM0 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=pgk PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.539e-41
Identity = 89/122 (72.95%), Postives = 96/122 (78.69%), Query Frame = -3
Query:  328 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 690
            A SK+    +I   WMGLD+GPD+IK F  AL   KTIIWNGPMGVFEFDKFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV AL+DA
Sbjct:  281 AESKISQIDSISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFADGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKILPGVAALNDA 402          
The following BLAST results are available for this feature:
BLAST of CN189258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_PROMA3.313e-4472.50Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_SYNJB4.326e-4469.42Phosphoglycerate kinase OS=Synechococcus sp. GN=pg... [more]
PGK_PROMT1.259e-4372.73Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROMS2.804e-4375.41Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM14.783e-4371.90Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM96.247e-4374.59Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM26.247e-4374.59Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGKH_CHLRE6.247e-4369.17Phosphoglycerate kinase, chloroplastic OS=Chlamydo... [more]
PGK_PROMP9.021e-4274.59Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM01.539e-4172.95Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001J03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189258 ID=CN189258; Name=CN189258; organism=Citrus sinensis; type=EST; length=692bp
TTTTTCAGAACAATGGAATATTGTAGTGCCAGGATTCATGCATTATCTAA
CAATCATCAACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCA
GGAAACTTATAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCA
GAAAAATGCATCACCATTGATGCCTGTGAGAAAGAATTTATTTTTACTCT
TACAGCATCTACAAAACCAACTCTAATGATAAAGTTTAACTTTTATCCAC
TCTGGGCTGACAACCAGCCACACATACAACTCTGGAAATGGCACATTTAA
AAAAGGAAAGTCCAGGAACTGGGTTTAAGCATCATCAAGAGCAAGCACAC
CAGGGAGTGTTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTG
GAGATATGGCTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCAAC
TGAGTCACCTCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCG
CAAGCTTCTTGGCAATTGCCTCAGTGCCAGCAGCAAATTTATCAAATTCA
AACACACCCATAGGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGC
TTCACTGAATGACTTGATGGCATCAGGTCCAACATCCAAGCCCATCCAAC
CATCTGGAATTGCCGTTGCTGGCACCACCTTGCTGTTGGCAT
back to top