CN189258

Overview
NameCN189258
Unique NameCN189258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_BACST (Phosphoglycerate kinase OS=Bacillus stearothermophilus GN=pgk PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.794e-35
Identity = 73/120 (60.83%), Postives = 89/120 (74.17%), Query Frame = -3
Query:  331 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 690
            AN+KVVP  AIP  W  LD+GP   + + + +  +K ++WNGPMGVFE D FA GT+AIA+ LAE       ++IGGGDS AAVEK GLADKM HISTGGGASLE +EGK LPGV+AL+D
Sbjct:  276 ANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAE--ALDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALED 393          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_RUBXD (Phosphoglycerate kinase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=pgk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.262e-35
Identity = 69/120 (57.50%), Postives = 88/120 (73.33%), Query Frame = -3
Query:  331 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 690
            A ++ VP   IP+GWMGLD+GP  ++ F   +   +TI WNGPMGVFE D FA GTE +A+ +AE    G T+++GGGDSVAAV K+GL D+MSHISTGGGASLE +EG+ LPGV  L +
Sbjct:  272 ARTRTVPVEEIPEGWMGLDIGPRTVELFRRHILQARTIFWNGPMGVFEIDAFARGTEGVARAVAE---SGATSVVGGGDSVAAVRKLGLEDRMSHISTGGGASLEYVEGRELPGVAVLPE 388          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_CORK4 (Phosphoglycerate kinase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.068e-34
Identity = 71/117 (60.68%), Postives = 88/117 (75.21%), Query Frame = -3
Query:  334 KVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLPGVLALD 681
            K V A  I DGWMGLD G ++IK+F E L+  KTI WNGP+GVFEF+ FA GT+ +A+ +AE +  G  ++IGGGDS +AV  +G AD+  SHISTGGGASLEL+EGKTLPGV  LD
Sbjct:  286 KTVSADGIEDGWMGLDTGAESIKTFGERLNGAKTIFWNGPVGVFEFEAFANGTKGLAEAIAEATKNGAFSVIGGGDSASAVRNLGFADEAFSHISTGGGASLELIEGKTLPGVAVLD 402          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_LEUMM (Phosphoglycerate kinase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.395e-34
Identity = 68/121 (56.20%), Postives = 93/121 (76.86%), Query Frame = -3
Query:  331 ANSKVVPAT-AIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 690
            A ++VV A   IPDG+MGLD+GP ++K   + L   KT++WNGPMGVFE   FA GT AI ++L +++  G TTI+GGGDS AAV+++G+ADK++HISTGGGASLE LEGK LPG+ ++ +
Sbjct:  284 AKTEVVDAEDGIPDGYMGLDIGPKSVKLLQDTLSDAKTVVWNGPMGVFEMSNFAKGTLAIGEELVKVTENGGTTIVGGGDSTAAVQQLGVADKLTHISTGGGASLEYLEGKELPGIASISE 404          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_CHLPB (Phosphoglycerate kinase OS=Chlorobium phaeobacteroides (strain BS1) GN=pgk PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.395e-34
Identity = 70/120 (58.33%), Postives = 87/120 (72.50%), Query Frame = -3
Query:  331 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 690
            A +  VP   IP+  MGLD+GP  I +FS  +   KT++WNGPMGVFE + FA GT AIA+ LA+ + KG  +I+GGGDS AAV K GLA  ++HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  278 AETMAVPVGGIPENMMGLDIGPKTIDTFSREILAAKTVVWNGPMGVFEIEPFAKGTIAIAQALADATAKGTISIVGGGDSAAAVMKAGLASGITHISTGGGASLEFLEGKELPGITALND 397          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_TREDE (Phosphoglycerate kinase OS=Treponema denticola GN=pgk PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.822e-34
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = -3
Query:  334 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 690
            A + +V +T IPD  MG+DVGP  +  + E + ++K+I+WNGP+GVFEF+ F+ GTE  A+ +A  + KG  TI+GGGDSVAAV K  LADKMSH+STGGGASLE LEGK LPG+  LD
Sbjct:  299 AEAVLVESTDIPDNLMGMDVGPKTLALYKEIILSSKSIVWNGPVGVFEFEAFSKGTEETARLVAAATEKGALTIVGGGDSVAAVNKFNLADKMSHVSTGGGASLEFLEGKVLPGIACLD 417          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_SCHMA (Phosphoglycerate kinase OS=Schistosoma mansoni GN=PGK PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.822e-34
Identity = 68/113 (60.18%), Postives = 83/113 (73.45%), Query Frame = -3
Query:  328 TAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 666
            + I DGWMGLD+GP  I+ FS+ +   KTI+WNGPMGVFE DKFA GT+A   ++ + +  G TTIIGGGD+     K    DK+SH+STGGGASLELLEGK LPGV+AL DA
Sbjct:  303 SGIADGWMGLDIGPKTIEEFSKVISRAKTIVWNGPMGVFEMDKFATGTKAAMDEVVKATKNGATTIIGGGDTATCCAKWDTEDKVSHVSTGGGASLELLEGKQLPGVVALTDA 415          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_THEAB (Phosphoglycerate kinase OS=Thermosipho africanus (strain TCF52B) GN=pgk PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.379e-34
Identity = 64/108 (59.26%), Postives = 84/108 (77.78%), Query Frame = -3
Query:  337 IPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 660
            +P+GWMGLD+GP  ++ F  ++   KTI+WNGPMGVFE + F+ GT+ +A  +AE + KG TTIIGGGDS AA+ K GL DK+SH+STGGGASLE LEGK LPG+ ++
Sbjct:  287 LPEGWMGLDIGPKTVELFRNSISGAKTIVWNGPMGVFEIEDFSNGTKEVAIAIAEETSKGATTIIGGGDSAAAIAKFGLKDKVSHVSTGGGASLEFLEGKELPGIASI 394          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_CLOAB (Phosphoglycerate kinase OS=Clostridium acetobutylicum GN=pgk PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.108e-34
Identity = 67/110 (60.91%), Postives = 87/110 (79.09%), Query Frame = -3
Query:  331 IPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 660
            IP+G+MGLD+GP   K +++A+   KT++WNGPMGVFEF+ FA GT+ +AK +AE      TT+IGGGDS AAV ++G  DKM+HISTGGGASLE LEGK LPG++AL+D
Sbjct:  290 IPEGYMGLDIGPKTQKLYADAVKEAKTVVWNGPMGVFEFENFAKGTKDVAKAMAE---SDATTVIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIVALND 396          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_ANOFW (Phosphoglycerate kinase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=pgk PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.108e-34
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = -3
Query:  331 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 690
            AN KVV    IP  W GLD+GP   + + + +  +K +IWNGPMGVFE D FA GT+A+A+ LA+   K   T+IGGGDS AAVEK GLA+KM HISTGGGASLE +EGK LPGV+AL+D
Sbjct:  276 ANKKVVNIDEIPSDWEGLDIGPKTRELYRDVILKSKLVIWNGPMGVFEMDAFAEGTKAVAQALAD--AKDTYTVIGGGDSAAAVEKFGLANKMDHISTGGGASLEFMEGKQLPGVVALND 393          
The following BLAST results are available for this feature:
BLAST of CN189258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_BACST4.794e-3560.83Phosphoglycerate kinase OS=Bacillus stearothermoph... [more]
PGK_RUBXD6.262e-3557.50Phosphoglycerate kinase OS=Rubrobacter xylanophilu... [more]
PGK_CORK41.068e-3460.68Phosphoglycerate kinase OS=Corynebacterium kroppen... [more]
PGK_LEUMM1.395e-3456.20Phosphoglycerate kinase OS=Leuconostoc mesenteroid... [more]
PGK_CHLPB1.395e-3458.33Phosphoglycerate kinase OS=Chlorobium phaeobactero... [more]
PGK_TREDE1.822e-3457.98Phosphoglycerate kinase OS=Treponema denticola GN=... [more]
PGK_SCHMA1.822e-3460.18Phosphoglycerate kinase OS=Schistosoma mansoni GN=... [more]
PGK_THEAB2.379e-3459.26Phosphoglycerate kinase OS=Thermosipho africanus (... [more]
PGK_CLOAB3.108e-3460.91Phosphoglycerate kinase OS=Clostridium acetobutyli... [more]
PGK_ANOFW3.108e-3460.00Phosphoglycerate kinase OS=Anoxybacillus flavither... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189258 ID=CN189258; Name=CN189258; organism=Citrus sinensis; type=EST; length=692bp
TTTTTCAGAACAATGGAATATTGTAGTGCCAGGATTCATGCATTATCTAA
CAATCATCAACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCA
GGAAACTTATAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCA
GAAAAATGCATCACCATTGATGCCTGTGAGAAAGAATTTATTTTTACTCT
TACAGCATCTACAAAACCAACTCTAATGATAAAGTTTAACTTTTATCCAC
TCTGGGCTGACAACCAGCCACACATACAACTCTGGAAATGGCACATTTAA
AAAAGGAAAGTCCAGGAACTGGGTTTAAGCATCATCAAGAGCAAGCACAC
CAGGGAGTGTTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTG
GAGATATGGCTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCAAC
TGAGTCACCTCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCG
CAAGCTTCTTGGCAATTGCCTCAGTGCCAGCAGCAAATTTATCAAATTCA
AACACACCCATAGGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGC
TTCACTGAATGACTTGATGGCATCAGGTCCAACATCCAAGCCCATCCAAC
CATCTGGAATTGCCGTTGCTGGCACCACCTTGCTGTTGGCAT
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