CN189258

Overview
NameCN189258
Unique NameCN189258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_YARLI (Phosphoglycerate kinase OS=Yarrowia lipolytica GN=PGK1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.181e-33
Identity = 66/113 (58.41%), Postives = 80/113 (70.80%), Query Frame = -3
Query:  331 ATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 669
            A  IPDGW GLD GP +I+ F + +  +KTI+WNGP GVFEFD FA GT+A+     +    G T IIGGGD+    +K G  DK+SH+STGGGASLELLEGKTLPGV AL +
Sbjct:  303 AEGIPDGWQGLDCGPKSIEEFQKVIGESKTILWNGPPGVFEFDNFAKGTKAVLDACVKAVDNGATVIIGGGDTATVAKKYGAEDKLSHVSTGGGASLELLEGKTLPGVAALSE 415          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_PROA2 (Phosphoglycerate kinase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=pgk PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.181e-33
Identity = 70/120 (58.33%), Postives = 86/120 (71.67%), Query Frame = -3
Query:  331 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 690
            A +  VP  +IP+  MGLD+GP  I ++S  +   +TI+WNGPMGVFE D FA GT AIA  LA+ + KG  +IIGGGDS AAV K GL   ++HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  278 AETATVPIDSIPETMMGLDIGPKTIDTYSREILKARTIVWNGPMGVFEIDAFATGTIAIAHALADATAKGAISIIGGGDSAAAVMKAGLESGITHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_CORJK (Phosphoglycerate kinase OS=Corynebacterium jeikeium (strain K411) GN=pgk PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.181e-33
Identity = 65/120 (54.17%), Postives = 89/120 (74.17%), Query Frame = -3
Query:  334 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLPGVLALD 690
            A+ + V   +IP+GWMGLD+GP+++K+F+E L  +KT+ WNGPMGVFEF  FA GT  +A+ + + +  G  +++GGGDS AAV  +GL ++  SHISTGGGASLE LEGK LPGV  L+
Sbjct:  283 ADHRTVDLNSIPEGWMGLDIGPESVKAFAEVLSKSKTVFWNGPMGVFEFPAFAEGTRGVAQAIIDATAAGAFSVVGGGDSAAAVRTLGLNEEGFSHISTGGGASLEFLEGKELPGVSVLE 402          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_BACSK (Phosphoglycerate kinase OS=Bacillus clausii (strain KSM-K16) GN=pgk PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.181e-33
Identity = 71/120 (59.17%), Postives = 86/120 (71.67%), Query Frame = -3
Query:  331 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 690
            AN K V  + IP  W  LD+GP   K++   L  +K +IWNGPMGVFE + FA GT+A+A  LAE S     ++IGGGDS AAVE+ GLADKMSHISTGGGASLE +EGK LPGV+AL +
Sbjct:  276 ANKKEVAISGIPADWEALDIGPKTRKTYEAVLKASKLVIWNGPMGVFELESFAGGTKAVANALAEASD--TYSVIGGGDSAAAVEQFGLADKMSHISTGGGASLEFMEGKELPGVVALSE 393          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_CLOTE (Phosphoglycerate kinase OS=Clostridium tetani GN=pgk PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.542e-33
Identity = 68/110 (61.82%), Postives = 85/110 (77.27%), Query Frame = -3
Query:  331 IPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 660
            I +G+MGLD+GP   K +S+ + + KT++WNGPMGVFEF+KFA GT  +AK +AE      TTIIGGGDS AAV ++G  DKM+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  294 IKEGYMGLDIGPKTSKLYSQEVQSAKTVVWNGPMGVFEFEKFAKGTIEVAKAMAESQA---TTIIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIAALND 400          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_CLONN (Phosphoglycerate kinase OS=Clostridium novyi (strain NT) GN=pgk PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.542e-33
Identity = 68/110 (61.82%), Postives = 85/110 (77.27%), Query Frame = -3
Query:  331 IPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 660
            IP+G+MGLD+GP     +++A+ T KT++WNGPMGVFEF  FA GT A+A+ +AE      TTIIGGGDS AAV ++G  DKM+HISTGGGASLE LEGK LPG++AL D
Sbjct:  291 IPEGYMGLDIGPKTSALYADAVRTAKTVVWNGPMGVFEFANFAKGTIAVAEAMAEADA---TTIIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIVALSD 397          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_BACME (Phosphoglycerate kinase OS=Bacillus megaterium GN=pgk PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.014e-33
Identity = 71/120 (59.17%), Postives = 88/120 (73.33%), Query Frame = -3
Query:  331 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 690
            AN +VV    IP  W GLD GP   + +++ +  +K +IWNGPMGVFE D FA GT+A+A+ LAE +     ++IGGGDS AAVEK  LADKMSHISTGGGASLE +EGK LPGV+AL+D
Sbjct:  276 ANIQVVSIEDIPSDWEGLDAGPKTREIYADVIKNSKLVIWNGPMGVFELDAFANGTKAVAEALAEATD--TYSVIGGGDSAAAVEKFNLADKMSHISTGGGASLEFMEGKELPGVVALND 393          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_BACSU (Phosphoglycerate kinase OS=Bacillus subtilis GN=pgk PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 2.631e-33
Identity = 69/120 (57.50%), Postives = 89/120 (74.17%), Query Frame = -3
Query:  331 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 690
            AN K+VP + IP     +D+G    +++++ +  +K ++WNGPMGVFE D FA GT+A+A+ LAE   K   ++IGGGDS AAVEK GLADKMSHISTGGGASLE +EGK LPGV AL+D
Sbjct:  276 ANVKIVPISEIPSDLEAIDIGTKTRETYADVIKNSKLVVWNGPMGVFEIDLFAQGTKAVAEALAE--AKDTYSVIGGGDSAAAVEKFGLADKMSHISTGGGASLEFMEGKELPGVAALND 393          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_BACP2 (Phosphoglycerate kinase OS=Bacillus pumilus (strain SAFR-032) GN=pgk PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.631e-33
Identity = 69/120 (57.50%), Postives = 89/120 (74.17%), Query Frame = -3
Query:  331 ANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 690
            AN+ +VP + IP     LD+G +  + +++ +  +K ++WNGPMGVFE D FA GT+AIA+ LAE   K   ++IGGGDS AAVEK GLAD+MSHISTGGGASLE +EGK LPGV AL+D
Sbjct:  276 ANTSIVPISEIPSDLEALDIGTETREKYADVIKNSKLVVWNGPMGVFEIDAFAKGTKAIAEALAE--AKDTYSVIGGGDSAAAVEKFGLADQMSHISTGGGASLEFMEGKELPGVTALND 393          
BLAST of CN189258 vs. ExPASy Swiss-Prot
Match: PGK_TRIVI (Phosphoglycerate kinase OS=Trichoderma viride GN=pgk1 PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.436e-33
Identity = 67/108 (62.04%), Postives = 79/108 (73.15%), Query Frame = -3
Query:  337 IPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 660
            IPDGWMGLD G ++IK + EA+D  KTI+WNGP GVFEF+KFA GT+A    + E    G   IIGGGD+     K G+ DK+SH+STGGGASLELLEGK LPGV AL
Sbjct:  307 IPDGWMGLDCGDESIKLYKEAIDEAKTILWNGPAGVFEFEKFAGGTKATLDAVVEGCKNGKIVIIGGGDTATVAAKYGVEDKLSHVSTGGGASLELLEGKELPGVTAL 414          
The following BLAST results are available for this feature:
BLAST of CN189258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_YARLI1.181e-3358.41Phosphoglycerate kinase OS=Yarrowia lipolytica GN=... [more]
PGK_PROA21.181e-3358.33Phosphoglycerate kinase OS=Prosthecochloris aestua... [more]
PGK_CORJK1.181e-3354.17Phosphoglycerate kinase OS=Corynebacterium jeikeiu... [more]
PGK_BACSK1.181e-3359.17Phosphoglycerate kinase OS=Bacillus clausii (strai... [more]
PGK_CLOTE1.542e-3361.82Phosphoglycerate kinase OS=Clostridium tetani GN=p... [more]
PGK_CLONN1.542e-3361.82Phosphoglycerate kinase OS=Clostridium novyi (stra... [more]
PGK_BACME2.014e-3359.17Phosphoglycerate kinase OS=Bacillus megaterium GN=... [more]
PGK_BACSU2.631e-3357.50Phosphoglycerate kinase OS=Bacillus subtilis GN=pg... [more]
PGK_BACP22.631e-3357.50Phosphoglycerate kinase OS=Bacillus pumilus (strai... [more]
PGK_TRIVI3.436e-3362.04Phosphoglycerate kinase OS=Trichoderma viride GN=p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189258 ID=CN189258; Name=CN189258; organism=Citrus sinensis; type=EST; length=692bp
TTTTTCAGAACAATGGAATATTGTAGTGCCAGGATTCATGCATTATCTAA
CAATCATCAACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCA
GGAAACTTATAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCA
GAAAAATGCATCACCATTGATGCCTGTGAGAAAGAATTTATTTTTACTCT
TACAGCATCTACAAAACCAACTCTAATGATAAAGTTTAACTTTTATCCAC
TCTGGGCTGACAACCAGCCACACATACAACTCTGGAAATGGCACATTTAA
AAAAGGAAAGTCCAGGAACTGGGTTTAAGCATCATCAAGAGCAAGCACAC
CAGGGAGTGTTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTG
GAGATATGGCTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCAAC
TGAGTCACCTCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCG
CAAGCTTCTTGGCAATTGCCTCAGTGCCAGCAGCAAATTTATCAAATTCA
AACACACCCATAGGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGC
TTCACTGAATGACTTGATGGCATCAGGTCCAACATCCAAGCCCATCCAAC
CATCTGGAATTGCCGTTGCTGGCACCACCTTGCTGTTGGCAT
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