CN189256

Overview
NameCN189256
Unique NameCN189256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:206..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.251e-18
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = -2
Query:  238 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 564
            G VI   +  AW+ QL K  E  + +VVDFTA+W GPC+ IAP    L+      V+FLKVDVD + +VA    + AMPTF   K+G   D +VGA +++L+  +AKH A
Sbjct:    3 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 112          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.135e-18
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  253 AWNEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 534
            A+ E L  + E  +LVVVDF+A+W GPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATI 101          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.135e-18
Identity = 47/97 (48.45%), Postives = 65/97 (67.01%), Query Frame = -2
Query:  247 EAWNEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 537
            EA+ E L  + +  +LVVVDF+A+W GPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V+ MPTF F K+G+ V +  GA KE+L+ TI +
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITE 103          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 2.135e-18
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  253 AWNEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 534
            A+ E L  + E  +LVVVDF+A+W GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 2.788e-18
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  253 AWNEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 534
            A+ E L  + E  +LVVVDF+A+W GPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.641e-18
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = -2
Query:  244 EAWNEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 537
            EA+ E L  + +  +LVVVDF+A+W GPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V+ MPTF F K+G+ V +  GA KE+L+ +I ++
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.641e-18
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = -2
Query:  253 EAWNEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 537
            +A+ E L  + +  +LVVVDF+A+W GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:    9 DAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 4.755e-18
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  253 AWNEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 534
            A+ E L  + +  +LVVVDF+A+W GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.211e-18
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  253 AWNEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 534
            A+ E L  + +  +LVVVDF+A+W GPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALDDAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.111e-18
Identity = 44/94 (46.81%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  253 AWNEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 534
            A+ E L  + +  +LVVVDF+A+W GPC+ I PF   L++K  NV+F++VDVD+ K +A +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEVLDSAGD--KLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of CN189256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
TRXH_CHLRE1.251e-1844.55Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
THIO_SHEEP2.135e-1848.94Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_RAT2.135e-1848.45Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_PIG2.135e-1848.94Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_BOVIN2.788e-1848.94Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_MOUSE3.641e-1846.94Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_CALJA3.641e-1847.37Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_HUMAN4.755e-1847.87Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_MACMU6.211e-1847.87Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_RABIT8.111e-1846.81Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189256 ID=CN189256; Name=CN189256; organism=Citrus sinensis; type=EST; length=568bp
TTTTTTTTTTTTTTTTTAAGGTTCAACAACAAATATTGAAATTATAATTA
TTGGTAAAGACCACACGTATGGAGCTTCATAGAACAGTTAAATTACCGGA
ATATTCAAACACACAAACAAACACAATCCCATAACCACTCTAATAAGTAA
ATTACAGACTGATAGCATATATTGAGGTCTATAGCCTCTAAAGCCAAAAG
GCAGGAGGATAGTTATAACTTATTAGGCAGAAGCAGTTGCCAAATGCTTG
GCAATAGTCTGCTGCAGTTCCTCTTTCTTTGCTCCAACCACCTTGTCCAC
AATCTTCCCCTCTTTCAGGAACATGAAAGTTGGCATGGCCTCCACTGCCC
AGTCAGTGGCAACACTCTTCAGTTCATCCACATCAACCTTCAGAAACAGG
ACATTAGGCAGTTTCTTGGCCAGCTCTGCCAAGAAAGGAGCAATGAAACG
GCATGGTCCTCACCATGAAGCAGTGAAATCAACAACAACCAGCTGTTTGG
TTTCATTGCTCTTCTGGAGCTGCTCGTTCCAGGCCTCAACGGTGTGGCAC
CCGATGACTTGTCCCTCT
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