CN189256

Overview
NameCN189256
Unique NameCN189256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:206..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 39/105 (37.14%), Postives = 61/105 (58.10%), Query Frame = -2
Query:  250 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKL--PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIA 558
            VI   + + W   + KS      + VD  A W GPC+ I+P  ++LA K   P  +F KV+VDE + +A+   V+AMPTF+F + GK +D + GA  + L++ +A
Sbjct:    3 VIEIRSYQHWISTIPKSG----YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKVA 103          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = -2
Query:  262 IGCHTVEAWNEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQ 555
            +G   +++  E  +K  +    VVVDF A+W GPC+ IAP L +L++    + F KVDVDEL  VA    V AMPTF F K G+  ++V GA    +Q
Sbjct:    1 MGVTPIKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQ 98          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = -2
Query:  238 QKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 516
            +K    K  VVVD  A+W GPC+ IAP + + A+   +  F ++DVDEL  VA +  + AMPTF+  K+G+ V  VVGA    L+  I   LA
Sbjct:   18 EKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIKALLA 110          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = -2
Query:  241 NEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 528
            NE LQ    +++LV+VDF A W GPCR I P L E+AK+  N+  ++V+ DE  ++AT + + ++PT M  K+G+ VD V+GA  K  L  TI K+L
Sbjct:   11 NEVLQ----SEKLVLVDFWAPWCGPCRMIGPILEEIAKEF-NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGAVPKSILIHTINKYL 102          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  244 LVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 492
            LV+VDF A W GPC+ + P L  LA +LP V  LK+D+D     A  + V ++PT +  K+GK V++ VG K K+ L + I+KH
Sbjct:   18 LVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKH 101          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = -2
Query:  241 SNETKQ-LVVVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 510
            S ET + +V+ DF A W GPC+ IAP L EL +++ + L  +K+DVDE +  A  + V ++PT + LK+G++V+  VG K KE LQ+ + KHL
Sbjct:   12 SAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = -2
Query:  241 QKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 516
            Q+  E+   V+VDF A W GPCR +AP + E+A++  + V  +KV+ DE  SVA+ + + ++PT M  K+G+ VD VVGA  K  L  T+ KHL
Sbjct:   14 QEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAVPKTTLANTLDKHL 107          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = -2
Query:  241 TKQLVVVDFTASW*GPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 501
            +++LV+VDF A W GPCR I+P + ELA++ +  V  +K++ DE  S++ ++ + ++PT M  K+GK VD V+GA  K  L   + K+L
Sbjct:   19 SEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.750e-12
Identity = 32/91 (35.16%), Postives = 59/91 (64.84%), Query Frame = -2
Query:  253 QLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-AKKEELQQTI 522
            +L +   T + VVVDF A+W GPC+ + P   E+A+   +  F+KVDVD+   +++++ + ++PT +F ++GK+ DK +G   K EL++ +
Sbjct:    9 ELDQLLSTNKKVVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNELKELL 99          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.750e-12
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = -2
Query:  244 LVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 492
            LV+VDF A W GPCR + P L  LA +LP+V   K+++DE    A  + V ++PT +  K+G  V +VVG K KE L   I KH
Sbjct:   18 LVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKH 101          
The following BLAST results are available for this feature:
BLAST of CN189256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
TXL1_SCHPO3.527e-1337.14Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
THIO_PENCH4.606e-1341.84Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_EMENI6.016e-1341.94Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIO_CYAME7.857e-1344.33Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
THIO_CHLMU7.857e-1344.05Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO_BACSU7.857e-1344.09Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
THIO1_SYNE71.026e-1243.62Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_CYACA1.340e-1240.45Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_MYCGA1.750e-1235.16Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
THIO_CHLPN1.750e-1245.24Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189256 ID=CN189256; Name=CN189256; organism=Citrus sinensis; type=EST; length=568bp
TTTTTTTTTTTTTTTTTAAGGTTCAACAACAAATATTGAAATTATAATTA
TTGGTAAAGACCACACGTATGGAGCTTCATAGAACAGTTAAATTACCGGA
ATATTCAAACACACAAACAAACACAATCCCATAACCACTCTAATAAGTAA
ATTACAGACTGATAGCATATATTGAGGTCTATAGCCTCTAAAGCCAAAAG
GCAGGAGGATAGTTATAACTTATTAGGCAGAAGCAGTTGCCAAATGCTTG
GCAATAGTCTGCTGCAGTTCCTCTTTCTTTGCTCCAACCACCTTGTCCAC
AATCTTCCCCTCTTTCAGGAACATGAAAGTTGGCATGGCCTCCACTGCCC
AGTCAGTGGCAACACTCTTCAGTTCATCCACATCAACCTTCAGAAACAGG
ACATTAGGCAGTTTCTTGGCCAGCTCTGCCAAGAAAGGAGCAATGAAACG
GCATGGTCCTCACCATGAAGCAGTGAAATCAACAACAACCAGCTGTTTGG
TTTCATTGCTCTTCTGGAGCTGCTCGTTCCAGGCCTCAACGGTGTGGCAC
CCGATGACTTGTCCCTCT
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