CN189256

Overview
NameCN189256
Unique NameCN189256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:206..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.286e-12
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  232 NEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKK--LPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV------------DKVVGAKKEELQQTIAKHLATA 528
            N++LQK   +   VVVDF A W  PC+ IAP   +L+ K  +P+VL F KV+VD ++  A  + + AMPTFMF KEGK V             + +GA  E+L     K +A A
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQVAVNGQAVIKGADPRTLGAAAEKLGGLAQKRVAGA 121          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.286e-12
Identity = 36/91 (39.56%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  253 EQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 525
            + L+ + +  +L+V DF A+W GPC+ +AP L  +AK+   V+F+K+DVDE + VA  + V AMPT +  K G  +  VVGA +  +++ I
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELI 103          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = -2
Query:  253 VVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 489
            VV+D    W GPC+ +AP   ELA+KL +V+FLK+D + E K +A +  +  +PTF  LK GKIVD+V GAK ++L   I
Sbjct:  106 VVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAI 185          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = -2
Query:  241 VVVDFTASW*GPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 489
            V+VDF A W GPCR +AP + E+A++    +  +KV+ DE   VA+ + + ++PT M  K G+ VD VVGA  K  L QT+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = -2
Query:  241 VVVDFTASW*GPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 489
            V+VDF A W GPCR +AP + E+A++    +  +KV+ DE   VA+ + + ++PT M  K G+ VD VVGA  K  L QT+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.899e-12
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  241 VVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 486
            +VDF A+W GPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + I KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKHL 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  241 VVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 486
            +VDF A+W GPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  241 VVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 486
            +VDF A+W GPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  241 VVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 486
            +VDF A+W GPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  241 VVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 486
            +VDF A+W GPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of CN189256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
THIO_FUSCU2.286e-1240.35Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
THIO_ECHGR2.286e-1239.56Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
TRXF_MESCR2.985e-1247.50Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO1_ANASP2.985e-1244.71Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO2.985e-1244.71Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
THIO_STAS13.899e-1248.81Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_STAAW5.092e-1247.62Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU5.092e-1247.62Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS5.092e-1247.62Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR5.092e-1247.62Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189256 ID=CN189256; Name=CN189256; organism=Citrus sinensis; type=EST; length=568bp
TTTTTTTTTTTTTTTTTAAGGTTCAACAACAAATATTGAAATTATAATTA
TTGGTAAAGACCACACGTATGGAGCTTCATAGAACAGTTAAATTACCGGA
ATATTCAAACACACAAACAAACACAATCCCATAACCACTCTAATAAGTAA
ATTACAGACTGATAGCATATATTGAGGTCTATAGCCTCTAAAGCCAAAAG
GCAGGAGGATAGTTATAACTTATTAGGCAGAAGCAGTTGCCAAATGCTTG
GCAATAGTCTGCTGCAGTTCCTCTTTCTTTGCTCCAACCACCTTGTCCAC
AATCTTCCCCTCTTTCAGGAACATGAAAGTTGGCATGGCCTCCACTGCCC
AGTCAGTGGCAACACTCTTCAGTTCATCCACATCAACCTTCAGAAACAGG
ACATTAGGCAGTTTCTTGGCCAGCTCTGCCAAGAAAGGAGCAATGAAACG
GCATGGTCCTCACCATGAAGCAGTGAAATCAACAACAACCAGCTGTTTGG
TTTCATTGCTCTTCTGGAGCTGCTCGTTCCAGGCCTCAACGGTGTGGCAC
CCGATGACTTGTCCCTCT
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