CN189256

Overview
NameCN189256
Unique NameCN189256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:206..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  241 VVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 486
            +VDF A+W GPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  241 VVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 486
            +VDF A+W GPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  241 VVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 486
            +VDF A+W GPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  241 VVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 486
            +VDF A+W GPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  241 VVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 486
            +VDF A+W GPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  241 VVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 486
            +VDF A+W GPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.651e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  241 VVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 486
            +VDF A+W GPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.651e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  241 VVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 486
            +VDF A+W GPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  241 VVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 486
            +VDF A+W GPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_NEUCR (Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = -2
Query:  298 TKQLVVVDFTASW*GPCRFIAPFLAELAK--KLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 501
            T Q VV DF A W GPC+ IAP  A+ AK   +PN L F K++VD ++ VA  + V AMPTF+F K GK V
Sbjct:   20 TTQYVVADFYADWCGPCKAIAPMYAQFAKTFSIPNFLAFAKINVDSVQQVAQHYRVSAMPTFLFFKNGKQV 90          
The following BLAST results are available for this feature:
BLAST of CN189256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
THIO_STAAN5.092e-1247.62Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM5.092e-1247.62Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC5.092e-1247.62Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB5.092e-1247.62Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA85.092e-1247.62Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA35.092e-1247.62Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_STAES6.651e-1247.62Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ6.651e-1247.62Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAHJ8.686e-1247.62Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO_NEUCR8.686e-1252.11Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189256 ID=CN189256; Name=CN189256; organism=Citrus sinensis; type=EST; length=568bp
TTTTTTTTTTTTTTTTTAAGGTTCAACAACAAATATTGAAATTATAATTA
TTGGTAAAGACCACACGTATGGAGCTTCATAGAACAGTTAAATTACCGGA
ATATTCAAACACACAAACAAACACAATCCCATAACCACTCTAATAAGTAA
ATTACAGACTGATAGCATATATTGAGGTCTATAGCCTCTAAAGCCAAAAG
GCAGGAGGATAGTTATAACTTATTAGGCAGAAGCAGTTGCCAAATGCTTG
GCAATAGTCTGCTGCAGTTCCTCTTTCTTTGCTCCAACCACCTTGTCCAC
AATCTTCCCCTCTTTCAGGAACATGAAAGTTGGCATGGCCTCCACTGCCC
AGTCAGTGGCAACACTCTTCAGTTCATCCACATCAACCTTCAGAAACAGG
ACATTAGGCAGTTTCTTGGCCAGCTCTGCCAAGAAAGGAGCAATGAAACG
GCATGGTCCTCACCATGAAGCAGTGAAATCAACAACAACCAGCTGTTTGG
TTTCATTGCTCTTCTGGAGCTGCTCGTTCCAGGCCTCAACGGTGTGGCAC
CCGATGACTTGTCCCTCT
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