CN189256

Overview
NameCN189256
Unique NameCN189256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:206..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 33/82 (40.24%), Postives = 53/82 (64.63%), Query Frame = -2
Query:  253 QLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 495
            ++VV+D    W GPC+ IAP   EL++K  +++FLK+D + + K +A +  +  +PTF  LK+ K+V +V GAK E+L   I
Sbjct:   98 KIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAI 179          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: GLRX3_HUMAN (Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 31/92 (33.70%), Postives = 56/92 (60.87%), Query Frame = -2
Query:  229 ETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 504
            + K L+VV F A W   C  +   +AELAK+LP V F+K++ + +  V+  + + ++PTF+F K  + +D++ GA   EL + + +H ++ S
Sbjct:   29 KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS 120          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = -2
Query:  241 AWNEQLQKSNETKQLVVVDFTASW*GPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 534
            +W+E L   +ET   V+VDF A W GPCR IAP + ELAK+    +   K++ DE  + AT + + ++PT +F K G+  D V+GA  K  L + + K++
Sbjct:   76 SWDE-LVIGSETP--VLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 34/91 (37.36%), Postives = 56/91 (61.54%), Query Frame = -2
Query:  238 ETKQLVVVDFTASW*GPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 504
            E++  V+VDF A W GPC+ IAP + ELAK+    +   K++ DE   +AT + + ++PT +F K G+  + ++GA  K  L  +I K+L+
Sbjct:   90 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYLS 180          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = -2
Query:  241 LVVVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 492
            LV+ DF A+W GPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = -2
Query:  241 LVVVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 492
            LV+ DF A+W GPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = -2
Query:  241 TKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 501
            ++Q V+VDF A W GPCR IA  + E+A    + L  +KV+ D+  ++AT++ + ++PT M    GK VD VVGA  K  L  T+ KHL
Sbjct:   18 SRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHL 106          
BLAST of CN189256 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 31/92 (33.70%), Postives = 58/92 (63.04%), Query Frame = -2
Query:  229 ETKQLVVVDFTASW*GPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 504
            +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ GA   EL + + +H+++ +
Sbjct:   31 KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGA 122          
The following BLAST results are available for this feature:
BLAST of CN189256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
TRXF2_ARATH5.630e-1140.24Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
GLRX3_HUMAN5.630e-1133.70Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2[more]
TRXM_PEA7.353e-1139.00Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM_SPIOL9.604e-1137.36Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO_LISMO9.604e-1138.37Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN9.604e-1138.37Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIO_GRIPA9.604e-1142.70Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
GLRX3_MOUSE9.604e-1133.70Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189256 ID=CN189256; Name=CN189256; organism=Citrus sinensis; type=EST; length=568bp
TTTTTTTTTTTTTTTTTAAGGTTCAACAACAAATATTGAAATTATAATTA
TTGGTAAAGACCACACGTATGGAGCTTCATAGAACAGTTAAATTACCGGA
ATATTCAAACACACAAACAAACACAATCCCATAACCACTCTAATAAGTAA
ATTACAGACTGATAGCATATATTGAGGTCTATAGCCTCTAAAGCCAAAAG
GCAGGAGGATAGTTATAACTTATTAGGCAGAAGCAGTTGCCAAATGCTTG
GCAATAGTCTGCTGCAGTTCCTCTTTCTTTGCTCCAACCACCTTGTCCAC
AATCTTCCCCTCTTTCAGGAACATGAAAGTTGGCATGGCCTCCACTGCCC
AGTCAGTGGCAACACTCTTCAGTTCATCCACATCAACCTTCAGAAACAGG
ACATTAGGCAGTTTCTTGGCCAGCTCTGCCAAGAAAGGAGCAATGAAACG
GCATGGTCCTCACCATGAAGCAGTGAAATCAACAACAACCAGCTGTTTGG
TTTCATTGCTCTTCTGGAGCTGCTCGTTCCAGGCCTCAACGGTGTGGCAC
CCGATGACTTGTCCCTCT
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