CN189254

Overview
NameCN189254
Unique NameCN189254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189254_ssr340 microsatellite CN189254_ssr340:340..351. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1647 contig Csv1_Contig1647:895..1590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 51/78 (65.38%), Postives = 60/78 (76.92%), Query Frame = -3
Query:  464 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKH 697
            G WK K IKNP YKG W AP IDNPD+  D  LY + +LK+VG ELWQVKSG++FDN+LV+DD E A K AE+TWGKH
Sbjct:  277 GEWKAKMIKNPAYKGIWVAPDIDNPDYVHDDKLYNFKDLKFVGFELWQVKSGSIFDNILVTDDLEAAKKFAEDTWGKH 354          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_MACFU (Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = -3
Query:  470 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWG 697
            G WKP++I NP+YKG W  P IDNP++  DP +Y Y N   +G++LWQVKSGT+FDN L+++D  YA +   ETWG
Sbjct:  273 GEWKPRQIDNPDYKGTWIHPEIDNPEYSPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWG 348          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_MACFA (Calreticulin OS=Macaca fascicularis GN=CALR PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = -3
Query:  470 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWG 697
            G WKP++I NP+YKG W  P IDNP++  DP +Y Y N   +G++LWQVKSGT+FDN L+++D  YA +   ETWG
Sbjct:  273 GEWKPRQIDNPDYKGTWIHPEIDNPEYSPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWG 348          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_HUMAN (Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = -3
Query:  470 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWG 697
            G WKP++I NP+YKG W  P IDNP++  DP +Y Y N   +G++LWQVKSGT+FDN L+++D  YA +   ETWG
Sbjct:  273 GEWKPRQIDNPDYKGTWIHPEIDNPEYSPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWG 348          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_CERAE (Calreticulin OS=Cercopithecus aethiops GN=CALR PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = -3
Query:  470 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWG 697
            G WKP++I NP+YKG W  P IDNP++  DP +Y Y N   +G++LWQVKSGT+FDN L+++D  YA +   ETWG
Sbjct:  273 GEWKPRQIDNPDYKGTWIHPEIDNPEYSPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWG 348          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_SCHMA (Calreticulin OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = -3
Query:  467 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGK 697
            G W P++I NP YKG+WK   IDNP++K DP+LYV  ++ YVG +LWQV SG++FDN+L++D P++A +  E  W K
Sbjct:  271 GEWTPRRIDNPKYKGEWKPVQIDNPEYKHDPELYVLNDIGYVGFDLWQVDSGSIFDNILITDSPDFAKEEGERLWRK 347          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_BOVIN (Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = -3
Query:  470 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWG 697
            G WKP++I NP YKG W  P IDNP++  D ++Y Y N   +G++LWQVKSGT+FDN L+++D  YA +   ETWG
Sbjct:  273 GEWKPRQIDNPEYKGIWIHPEIDNPEYSPDSNIYAYENFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWG 348          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_RAT (Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = -3
Query:  470 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWG 697
            G WKP++I NP+YKG W  P IDNP++  D ++Y Y +   +G++LWQVKSGT+FDN L+++D  YA +   ETWG
Sbjct:  273 GEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWG 348          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_RABIT (Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = -3
Query:  470 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWG 697
            G WKP++I NP+YKG W  P IDNP++  D ++Y Y +   +G++LWQVKSGT+FDN L+++D  YA +   ETWG
Sbjct:  273 GEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWG 348          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_MOUSE (Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = -3
Query:  470 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWG 697
            G WKP++I NP+YKG W  P IDNP++  D ++Y Y +   +G++LWQVKSGT+FDN L+++D  YA +   ETWG
Sbjct:  273 GEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWG 348          
The following BLAST results are available for this feature:
BLAST of CN189254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CALR_CHLRE5.975e-2565.38Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=... [more]
CALR_MACFU6.183e-2253.95Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=... [more]
CALR_MACFA6.183e-2253.95Calreticulin OS=Macaca fascicularis GN=CALR PE=2 S... [more]
CALR_HUMAN6.183e-2253.95Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1[more]
CALR_CERAE6.183e-2253.95Calreticulin OS=Cercopithecus aethiops GN=CALR PE=... [more]
CALR_SCHMA1.799e-2151.95Calreticulin OS=Schistosoma mansoni PE=2 SV=2[more]
CALR_BOVIN6.836e-2152.63Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2[more]
CALR_RAT1.166e-2051.32Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=... [more]
CALR_RABIT1.166e-2051.32Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1... [more]
CALR_MOUSE1.166e-2051.32Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189254 ID=CN189254; Name=CN189254; organism=Citrus sinensis; type=EST; length=699bp
TTTTTTTAGCTCAATGTCCAAGTATATTCATAAATGTGTCCATAAAAAGC
CCTATATATTTCAATCCTCTTTGTTCTAAAAGCTCAGATAGTCATAATGA
GATTTAAGCAATGATCGGCCACACAAATTTTAAACGCAGCCTTTCTTTCT
ACTCTTCAGGTCACTTTCCTAAAGCATAAACGTCCCTAGAGCTGAAAATC
AAAATAGAAAACAGAAAAATTTTGGAGCATCTTTACGCCCAAATTCTCGG
GGCTTATCATAGCATTTTCCCCTACAGCTCATCATGTACATCCTTGTCTG
CGTCTCCGCTGCTGGAGTCTGATTTGGTTTCAGTATCAGCATCATCATCA
TCTTCAGTGTCATCGTCATCATTATCCTCAGCATCAGAATCAGGTGCGTC
CTTTGATTCCTCCTCCTCTCTCTTCTTCTCGGCCTCATCAAATGCTGCCT
TCTCGGCATCCTTATGCTTTCCCCATGTTTCTTCGGCCAACTTATTGGCA
TACTCTGGATCATCACTAACCAAGACATTGTCAAACATGGTTCCAGATTT
CACCTGCCACAACTCAATGCCAACATACTTCAAGTTGGGATACACATAAA
GGTCTGGGTCATCCTTGAAATCTGGGTTGTCAATCATTGGAGCCTTCCAC
TTGCCCTTGTAATTAGGGTTCTTAATTTTCTTTGGCTTCCATGGACCCT
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