CN189248

Overview
NameCN189248
Unique NameCN189248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_PODAN (Superoxide dismutase [Cu-Zn] OS=Podospora anserina GN=SOD1 PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 3.685e-36
Identity = 81/152 (53.29%), Postives = 93/152 (61.18%), Query Frame = -2
Query:  156 MVKAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 605
            MVKAVAV+ G   V G+V F QE + GPTT++  ++G       G H+H  GD TNGC S GPHFNP GK HG   DENRH            G +  TV DN I L GP S+IGR VVVHA  DDLGKG  E S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVVRGDSKVSGSVVFEQETENGPTTITWDITGHDANAKRGMHIHTFGDNTNGCTSAGPHFNPHGKTHGNRTDENRHVGDLGNIETDAQGNSKGTVTDNLIKLIGPESVIGRTVVVHAGTDDLGKGDTEESLKTGNAGARPACGVIGI 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_ASPNG (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger GN=sodC PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 4.812e-36
Identity = 78/152 (51.32%), Postives = 95/152 (62.50%), Query Frame = -2
Query:  156 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 605
            MVKAVAV+ G   V GTV+F Q  +  PTT+S +++G       GFHVH  GD TNGC S GPHFNP GK HG PED+ RH            G A  +  D  + L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVIRGDSKVSGTVTFEQANENTPTTISWNITGHDANAERGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGI 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_ASPNC (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sodC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.812e-36
Identity = 78/152 (51.32%), Postives = 95/152 (62.50%), Query Frame = -2
Query:  156 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 605
            MVKAVAV+ G   V GTV+F Q  +  PTT+S +++G       GFHVH  GD TNGC S GPHFNP GK HG PED+ RH            G A  +  D  + L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVIRGDSKVSGTVTFEQANENTPTTISWNITGHDANAERGFHVHQFGDNTNGCTSAGPHFNPFGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGI 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_YEAST (Superoxide dismutase [Cu-Zn] OS=Saccharomyces cerevisiae GN=SOD1 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.400e-35
Identity = 80/152 (52.63%), Postives = 93/152 (61.18%), Query Frame = -2
Query:  156 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 605
            MV+AVAVL G  GV G V F Q  +  PTTVS  ++G  P    GFH+H  GD TNGC+S GPHFNP  K HG P DE RH            G A  +  D+ I L GP S++GR+VV+HA  DDLGKG  E S  TGNAG R ACG+IGL
Sbjct:    1 MVQAVAVLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKGDTEESLKTGNAGPRPACGVIGL 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_HORSE (Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.829e-35
Identity = 75/150 (50.00%), Postives = 92/150 (61.33%), Query Frame = -2
Query:  156 VKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 602
            +KAV VL G   V G + F Q+ +G P  + G + GL  G HGFHVH  GD T GC + G HFNP  K+HG P+DE RH            G A   + D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    3 LKAVCVLKGDGPVHGVIHFEQQQEGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_BOTFU (Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckeliana GN=sod1 PE=3 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 1.829e-35
Identity = 79/152 (51.97%), Postives = 96/152 (63.16%), Query Frame = -2
Query:  156 MVKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 605
            MVKAVA + G   + GTV+F Q E + PTT++ +++G       G HVH  GD TNGC S GPHFNP G+ HG P DE RH            G AT +V D+ I L GP S+IGR VVVH+  DDLGKG +E SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVATVRGDSKISGTVTFEQSEENSPTTITWNITGNDANAERGMHVHQFGDNTNGCTSAGPHFNPHGQTHGAPTDEVRHVGDLGNFKTDAQGNATGSVQDSHIKLIGPLSVIGRTVVVHSGTDDLGKGENEESKKTGNAGTRPACGVIGI 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_EMENI (Superoxide dismutase [Cu-Zn] OS=Emericella nidulans GN=sodA PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.119e-35
Identity = 79/152 (51.97%), Postives = 93/152 (61.18%), Query Frame = -2
Query:  156 MVKAVAVLGGTEGVKGTVSFSQEGDGP-TTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 605
            MVKAVAVL G   V GTV+F Q  +   TTVS +++G  P    GFH+H  GD TNGC S GPHFNP GK HG PEDE RH            G +  +  D  I L G  S++GR +VVHA  DDLG+G  E SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLRGDSKVSGTVTFEQADENSNTTVSWNITGNDPNAERGFHIHQFGDNTNGCTSAGPHFNPFGKTHGAPEDEVRHVGDLGNFKTDAEGNSKGSKTDKLIKLIGAESVLGRTLVVHAGTDDLGRGDSEESKKTGNAGARPACGVIGI 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_HUMLT (Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.074e-35
Identity = 78/152 (51.32%), Postives = 94/152 (61.84%), Query Frame = -2
Query:  156 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 605
            MVKAVAVL G   + GTV+F Q  +  PTTVS +++G  P    G H+H  GD TNGC S GPH+NP  K HG P DE RH            G A  +V D  I + G  SI+GR +VVHA  DDLG+GG+E SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLRGDSKITGTVTFEQANESAPTTVSWNITGHDPNAERGMHIHQFGDNTNGCTSAGPHYNPFKKTHGAPTDEVRHVGDLGNIKTDAEGNAVGSVQDKLIKVIGAESILGRTIVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGI 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_HAECO (Superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.949e-35
Identity = 75/150 (50.00%), Postives = 94/150 (62.67%), Query Frame = -2
Query:  162 KAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGII 599
            +AVAVL G  GV GTV FSQ+ +  P  + G + GL PG HGFHVH  GD+TNGC S GPHFNP  K HG P+D+ RH            G A F + D+ + + G ++++GR++VVHA  DDLGKG     E S  TGN G RVACG+I
Sbjct:    4 RAVAVLRGDPGVTGTVWFSQDKESDPCVIKGEIKGLTPGLHGFHVHQYGDSTNGCTSAGPHFNPFNKTHGGPKDDVRHVGDLGNVEAGADGVAHFEIKDHLVKIHGEHTVVGRSLVVHAGTDDLGKGVGEKKEESLKTGNRGARVACGVI 153          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_ASPFL (Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus GN=sodC PE=3 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 6.949e-35
Identity = 78/152 (51.32%), Postives = 95/152 (62.50%), Query Frame = -2
Query:  156 MVKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 605
            MVKAVAV G ++ + GTV+F Q + + PTTVS +++G        FHVH  GD TNGC S GPHFNP GKEHG PEDENRH            G A  +  D  I L G  S++GR +V+HA  DDLG+  H  SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVRGDSK-ISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPACGVIGI 151          
The following BLAST results are available for this feature:
BLAST of CN189248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_PODAN3.685e-3653.29Superoxide dismutase [Cu-Zn] OS=Podospora anserina... [more]
SODC_ASPNG4.812e-3651.32Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC_ASPNC4.812e-3651.32Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC_YEAST1.400e-3552.63Superoxide dismutase [Cu-Zn] OS=Saccharomyces cere... [more]
SODC_HORSE1.829e-3550.00Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=... [more]
SODC_BOTFU1.829e-3551.97Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckel... [more]
SODC_EMENI3.119e-3551.97Superoxide dismutase [Cu-Zn] OS=Emericella nidulan... [more]
SODC_HUMLT4.074e-3551.32Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=... [more]
SODC_HAECO6.949e-3550.00Superoxide dismutase [Cu-Zn] OS=Haemonchus contort... [more]
SODC_ASPFL6.949e-3551.32Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189248 ID=CN189248; Name=CN189248; organism=Citrus sinensis; type=EST; length=636bp
TTTTTTTTTTTTTTTATCCAACAAAGTTTTAGATTTCTCTTATTCAAGAT
CATAGTCTTGAAAAGTCACACTCAAGCATATATGGACTATAATGCACTCA
AAACATCATATCAAATGAATTTATTATTGTCCGATGAGATGCGGCTTCAT
CCTTGGAGGCCAATGATGCCGCAAGCTACTCTGCCACCAGCATTTCCAGT
GGTTTTGCTCAGCTCATGACCGCCCTTGCCAAGATCATCGGGATCTGCGT
GGACTACAACAGCCCTTCCAATAATGGAATTTGGTCCAGAAAGAGGAATC
TGATTGTCAACAACTGTAAAAGTAGCAGTACCATCATCACCAACATTGAC
ATTTCCTAAGTCACCAGCATGACGATTCTCATCCTCTGGAGGTCCATGTT
CTTTTCCAGCAGGGTTAAAGTGGGGTCCGGTAGACATGCAACCATTTGTT
GTGTCTCCAAGAGCATGAACATGGAATCCATGAGGACCAGGCTTGAGACC
AGAGAGGCTTCCTGATACAGTTGTTGGACCATCTCCTTCCTGGGAAAAGG
AAACAGTTCCCTTGACACCCTCAGTTCCACCAAGAACTGCAACTGCTTTC
ACCATTGTGCTGTGTGATTTTTTATGATGGTCTACT
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