CN189248

Overview
NameCN189248
Unique NameCN189248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_PAESI (Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinensis GN=SOD1 PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.641e-34
Identity = 77/152 (50.66%), Postives = 92/152 (60.53%), Query Frame = -2
Query:  156 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKP-GPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 605
            MVKAV VL G   + G V+F QE D  PTT+S  +S        GFH+   GD TNGC S GPHFNP GK HG   DENRH            G +  ++ D  I L GP+S+IGR VV+HA  DDLGKGG++ S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVCVLRGDSKITGIVNFEQESDSSPTTISWEISNHDADAKRGFHITPFGDNTNGCTSAGPHFNPHGKTHGNVTDENRHVGDMGNIETDCDGNSKGSIKDKLIKLIGPHSVIGRTVVIHAGTDDLGKGGNDESLKTGNAGPRPACGVIGV 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_COLGL (Superoxide dismutase [Cu-Zn] OS=Colletotrichum gloeosporioides GN=SOD1 PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.641e-34
Identity = 74/152 (48.68%), Postives = 90/152 (59.21%), Query Frame = -2
Query:  156 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 605
            MVKAV V+ G   V G++ F QE +  PT ++  +SG       G H+H  GD TNGC S GPHFNP  K HG PED NRH            G +  TV D+ + L GP S+IGR +VVH   DDLGKG +E S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVCVVRGDSKVTGSIVFEQESESAPTKITWDISGNDANAKRGMHIHTFGDNTNGCTSAGPHFNPHNKTHGAPEDSNRHVGDLGNIETDANGNSKGTVTDSHVKLIGPESVIGRTIVVHGGTDDLGKGDNEESLKTGNAGPRPACGVIGI 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_KLULA (Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lactis GN=SOD1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.449e-34
Identity = 78/152 (51.32%), Postives = 88/152 (57.89%), Query Frame = -2
Query:  156 MVKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 605
            MV AVAVL G   V G V F QE  D  T +S  ++G       GFH+H  GD TNGC S GPHFNP  K HG PEDE RH            G +  ++ D  I L GP SI+GR VVVHA  DDLGKGG   S  TGNAG R ACG+IG+
Sbjct:    1 MVNAVAVLKGDSSVSGIVRFEQESEDQQTKISWEITGNDANALRGFHIHTFGDNTNGCTSAGPHFNPFNKNHGAPEDEERHVGDLGNIPTDAQGISKGSLTDKHIKLLGPLSIVGRTVVVHAGQDDLGKGGDAESLKTGNAGARHACGVIGI 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.504e-34
Identity = 80/166 (48.19%), Postives = 98/166 (59.04%), Query Frame = -2
Query:  156 KKSHSTMV------KAVAVLGGTEGVKGTVSFSQEGDGP-TTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGG---HELSKTTGNAGGRVACGIIGL 623
            ++SHS  +      +AVAVL G  GV G + F Q   G  TT+SGS+SGL PG HGFHVH  GD TNGC S G H+NP GK HG P D  +H            G A   +    I L GP S+IG ++VVHA+ DDLG+G     E S  TGNAG R+ACG+IG+
Sbjct:   32 RRSHSNGMHGNGARRAVAVLRGDAGVSGIIYFQQGSGGSITTISGSVSGLTPGLHGFHVHQYGDQTNGCTSAGDHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYDIKLRGPLSVIGHSLVVHANTDDLGQGTGNMREESLKTGNAGSRLACGVIGI 197          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_CAEEL (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.683e-34
Identity = 76/152 (50.00%), Postives = 94/152 (61.84%), Query Frame = -2
Query:  156 KAVAVLGGTEGVKGTVSFSQEGDGPTTV-SGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGIIGL 599
            +AVAVL G E V GT+  +Q+ +    V  G + GL PG HGFHVH  GD+TNGC+S GPHFNP GK HG P+ E RH            G A   + D  + L GPN+++GR++VVHA  DDLG+G     E SK TGNAG R ACG+I L
Sbjct:   26 RAVAVLRG-ETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 176          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC4_DICDI (Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium discoideum GN=sodD PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.311e-33
Identity = 79/150 (52.67%), Postives = 94/150 (62.67%), Query Frame = -2
Query:  162 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRH-AXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 605
            MVKA+ V+ G   V GT+ FSQE +G P  V+G++SGL  G HGFH+H  GDT+NGC+S G HFNP   EHG P    RH               A   + DN I L G  SIIGR +VVH + DDLG GG+ LSKTTGNAG RVACGI+
Sbjct:    1 MVKAICVVKGAV-VNGTIIFSQENEGSPVYVNGTISGLSGGLHGFHIHEFGDTSNGCLSAGAHFNPFHVEHGGPNSAIRHVGDLGNITSCPSSKVANVLIQDNVISLFGDLSIIGRTLVVHENQDDLGLGGN-LSKTTGNAGARVACGIL 148          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODE_HAECO (Extracellular superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.712e-33
Identity = 72/146 (49.32%), Postives = 91/146 (62.33%), Query Frame = -2
Query:  156 AVLGGTEG-VKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 590
            AV GG      G +   Q G     ++GS+SGL+PG HGFH+H  GD  NGC++ G HFNP    HG PED NRH            G     + D+ I L+G +++IGRA+V+HAD DDLG+G  ELSKTTGNAG RVACG+IG+
Sbjct:   38 AVKGGNPAKTVGIIDLVQTGT-LVKMNGSVSGLQPGLHGFHIHEKGDLGNGCLAAGAHFNPHKMMHGAPEDSNRHVGDLGNIETPKTGDTPILISDSVISLTGQHNVIGRAIVIHADMDDLGRGTSELSKTTGNAGARVACGVIGI 182          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_CAEBR (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis briggsae GN=sod-1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.920e-33
Identity = 75/152 (49.34%), Postives = 91/152 (59.87%), Query Frame = -2
Query:  156 KAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGIIGL 599
            +AVAVL G + V GT+  +Q  +  P  + G + GL PG HGFHVH  GD+TNGC+S GPHFNP GK HG P  E RH            G A   + D  I L G N++IGR++VVHA  DDLG+G     E S  TGNAG R ACG+I L
Sbjct:   26 RAVAVLRG-DVVSGTIWITQNSESDPAVIEGEIKGLTPGLHGFHVHQYGDSTNGCLSAGPHFNPFGKTHGGPNSETRHVGDLGNVEAGADGVAKVHITDKLITLYGANTVIGRSMVVHAGQDDLGQGVGDKAEESAKTGNAGARAACGVIAL 176          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_NPVAC (Putative superoxide dismutase [Cu-Zn] OS=Autographa californica nuclear polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.472e-32
Identity = 71/151 (47.02%), Postives = 93/151 (61.59%), Query Frame = -2
Query:  156 VKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTAT-FTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 602
            +KA+ ++ G   V G + F QE  + P  +SG L  L  G HGFHVH  GDT+NGC S G HFNP  ++HG P+ E RH             + T   ++DN + L GP++IIGR++VVH D DDLG   H LSKTTGN+GGR+ CGII +
Sbjct:    1 MKAICIISGD--VHGKIYFQQESANQPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGNIKSAGYNSLTEVNMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTDHPLSKTTGNSGGRLGCGIIAI 149          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 69/149 (46.31%), Postives = 94/149 (63.09%), Query Frame = -2
Query:  162 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 605
            MV A+ ++ G  GV+G V+ SQE +G P  ++G++SGL PG HG HVH  GDT+NGC+S G H+NP  +EHG P D  RH            G AT ++ D  + L G  S++GR +V+H+D DD G+G    SKT G++G RV CGII
Sbjct:    1 MVNAIVIIKGL-GVEGKVTLSQECEGSPIYINGTVSGLTPGQHGMHVHEFGDTSNGCISAGDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRDTIMSLFGDISVMGRTMVIHSDRDDYGRGNFPDSKTAGHSGKRVGCGII 148          
The following BLAST results are available for this feature:
BLAST of CN189248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_PAESI2.641e-3450.66Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinen... [more]
SODC_COLGL2.641e-3448.68Superoxide dismutase [Cu-Zn] OS=Colletotrichum glo... [more]
SODC_KLULA3.449e-3451.32Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lact... [more]
SODE_ONCVO4.504e-3448.19Extracellular superoxide dismutase [Cu-Zn] OS=Onch... [more]
SODC_CAEEL7.683e-3450.00Superoxide dismutase [Cu-Zn] OS=Caenorhabditis ele... [more]
SODC4_DICDI1.311e-3352.67Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium di... [more]
SODE_HAECO1.712e-3349.32Extracellular superoxide dismutase [Cu-Zn] OS=Haem... [more]
SODC_CAEBR2.920e-3349.34Superoxide dismutase [Cu-Zn] OS=Caenorhabditis bri... [more]
SODC_NPVAC2.472e-3247.02Putative superoxide dismutase [Cu-Zn] OS=Autograph... [more]
SODC6_DICDI4.216e-3246.31Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189248 ID=CN189248; Name=CN189248; organism=Citrus sinensis; type=EST; length=636bp
TTTTTTTTTTTTTTTATCCAACAAAGTTTTAGATTTCTCTTATTCAAGAT
CATAGTCTTGAAAAGTCACACTCAAGCATATATGGACTATAATGCACTCA
AAACATCATATCAAATGAATTTATTATTGTCCGATGAGATGCGGCTTCAT
CCTTGGAGGCCAATGATGCCGCAAGCTACTCTGCCACCAGCATTTCCAGT
GGTTTTGCTCAGCTCATGACCGCCCTTGCCAAGATCATCGGGATCTGCGT
GGACTACAACAGCCCTTCCAATAATGGAATTTGGTCCAGAAAGAGGAATC
TGATTGTCAACAACTGTAAAAGTAGCAGTACCATCATCACCAACATTGAC
ATTTCCTAAGTCACCAGCATGACGATTCTCATCCTCTGGAGGTCCATGTT
CTTTTCCAGCAGGGTTAAAGTGGGGTCCGGTAGACATGCAACCATTTGTT
GTGTCTCCAAGAGCATGAACATGGAATCCATGAGGACCAGGCTTGAGACC
AGAGAGGCTTCCTGATACAGTTGTTGGACCATCTCCTTCCTGGGAAAAGG
AAACAGTTCCCTTGACACCCTCAGTTCCACCAAGAACTGCAACTGCTTTC
ACCATTGTGCTGTGTGATTTTTTATGATGGTCTACT
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