CN189248

Overview
NameCN189248
Unique NameCN189248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2345 contig Csv1_Contig2345:155..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODE_MOUSE (Extracellular superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 53/143 (37.06%), Postives = 71/143 (49.65%), Query Frame = -2
Query:  159 VKGTVSFSQEGDGPT-----TVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHG--PPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 566
            + G V F Q G G       ++ G  +         HVH  GD + GC STGPH+NP    H   P +  N               TA+         L+GP++I+GR+VVVHA  DDLGKGG++ S   GNAG R+AC ++G
Sbjct:   92 ITGLVLFRQLGPGSRLEAYFSLEGFPAEQNASNRAIHVHEFGDLSQGCDSTGPHYNPMEVPHPQHPGDFGNFVVRNGQLWRHRVGLTAS---------LAGPHAILGRSVVVHAGEDDLGKGGNQASLQNGNAGRRLACCVVG 225          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = -2
Query:  156 PNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 284
            PNS++GRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:  156 PNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 198          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_DEIRA (Superoxide dismutase [Cu-Zn] OS=Deinococcus radiodurans GN=sodC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.841e-12
Identity = 50/153 (32.68%), Postives = 69/153 (45.10%), Query Frame = -2
Query:  165 VLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNG---------CMSTGPHFNP-AGKEHGPPEDENR--HAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGI 587
            +L  T  V GT +FS    G T VS  +SGLK GPHG H+H   +   G           + G HF+P A   H  P   N   H            G        N++ ++GP  ++GR++V+HAD DD        +   GN+GGR  CG+
Sbjct:   32 LLDQTGKVTGTATFSPSPIG-TRVSIEVSGLKAGPHGLHIHENPNCNPGPDAQGQTIPFGAAGGHFDPGASHNHDGPHARNDQGHGGDLPMITVGEDGKGRLNFDTNRLKMTGPTGVLGRSIVIHADADDY------QTNPAGNSGGRERCGV 177          
The following BLAST results are available for this feature:
BLAST of CN189248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODE_MOUSE1.456e-1637.06Extracellular superoxide dismutase [Cu-Zn] OS=Mus ... [more]
SODCP_POPTM4.383e-1374.42Superoxide dismutase [Cu-Zn], chloroplastic OS=Pop... [more]
SODC_DEIRA2.841e-1232.68Superoxide dismutase [Cu-Zn] OS=Deinococcus radiod... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189248 ID=CN189248; Name=CN189248; organism=Citrus sinensis; type=EST; length=636bp
TTTTTTTTTTTTTTTATCCAACAAAGTTTTAGATTTCTCTTATTCAAGAT
CATAGTCTTGAAAAGTCACACTCAAGCATATATGGACTATAATGCACTCA
AAACATCATATCAAATGAATTTATTATTGTCCGATGAGATGCGGCTTCAT
CCTTGGAGGCCAATGATGCCGCAAGCTACTCTGCCACCAGCATTTCCAGT
GGTTTTGCTCAGCTCATGACCGCCCTTGCCAAGATCATCGGGATCTGCGT
GGACTACAACAGCCCTTCCAATAATGGAATTTGGTCCAGAAAGAGGAATC
TGATTGTCAACAACTGTAAAAGTAGCAGTACCATCATCACCAACATTGAC
ATTTCCTAAGTCACCAGCATGACGATTCTCATCCTCTGGAGGTCCATGTT
CTTTTCCAGCAGGGTTAAAGTGGGGTCCGGTAGACATGCAACCATTTGTT
GTGTCTCCAAGAGCATGAACATGGAATCCATGAGGACCAGGCTTGAGACC
AGAGAGGCTTCCTGATACAGTTGTTGGACCATCTCCTTCCTGGGAAAAGG
AAACAGTTCCCTTGACACCCTCAGTTCCACCAAGAACTGCAACTGCTTTC
ACCATTGTGCTGTGTGATTTTTTATGATGGTCTACT
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