CN189248
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODE_MOUSE (Extracellular superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod3 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16 Identity = 53/143 (37.06%), Postives = 71/143 (49.65%), Query Frame = -2 Query: 159 VKGTVSFSQEGDGPT-----TVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHG--PPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 566 + G V F Q G G ++ G + HVH GD + GC STGPH+NP H P + N TA+ L+GP++I+GR+VVVHA DDLGKGG++ S GNAG R+AC ++G Sbjct: 92 ITGLVLFRQLGPGSRLEAYFSLEGFPAEQNASNRAIHVHEFGDLSQGCDSTGPHYNPMEVPHPQHPGDFGNFVVRNGQLWRHRVGLTAS---------LAGPHAILGRSVVVHAGEDDLGKGGNQASLQNGNAGRRLACCVVG 225
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13 Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = -2 Query: 156 PNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 284 PNS++GRA+VVH DDLGKGGHELS +TGNAGGR+ACG++GL Sbjct: 156 PNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 198
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_DEIRA (Superoxide dismutase [Cu-Zn] OS=Deinococcus radiodurans GN=sodC PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.841e-12 Identity = 50/153 (32.68%), Postives = 69/153 (45.10%), Query Frame = -2 Query: 165 VLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNG---------CMSTGPHFNP-AGKEHGPPEDENR--HAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGI 587 +L T V GT +FS G T VS +SGLK GPHG H+H + G + G HF+P A H P N H G N++ ++GP ++GR++V+HAD DD + GN+GGR CG+ Sbjct: 32 LLDQTGKVTGTATFSPSPIG-TRVSIEVSGLKAGPHGLHIHENPNCNPGPDAQGQTIPFGAAGGHFDPGASHNHDGPHARNDQGHGGDLPMITVGEDGKGRLNFDTNRLKMTGPTGVLGRSIVIHADADDY------QTNPAGNSGGRERCGV 177 The following BLAST results are available for this feature:
BLAST of CN189248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 143
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189248 ID=CN189248; Name=CN189248; organism=Citrus sinensis; type=EST; length=636bpback to top |