CN189248

Overview
NameCN189248
Unique NameCN189248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2345 contig Csv1_Contig2345:155..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.888e-40
Identity = 83/149 (55.70%), Postives = 98/149 (65.77%), Query Frame = -2
Query:  156 KAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 599
            KAV VL GT  V GTV F+QEG+  P  V+G ++GL PG HGFHVHA GD TNGC+S GPHFNP  K HG P D  RH            G A   + D  + LSG +SIIGR +V+H   DDLGKGG+E S  TGNAGGR+ACG+IG+
Sbjct:    4 KAVCVLKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACGVIGI 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 3.220e-40
Identity = 82/150 (54.67%), Postives = 100/150 (66.67%), Query Frame = -2
Query:  156 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 602
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH            G A  +  D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_MACFU (Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 3.220e-40
Identity = 82/150 (54.67%), Postives = 100/150 (66.67%), Query Frame = -2
Query:  156 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 602
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH            G A  +  D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_MACFA (Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 3.220e-40
Identity = 82/150 (54.67%), Postives = 100/150 (66.67%), Query Frame = -2
Query:  156 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 602
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH            G A  +  D+ I LSG +SIIGR +VVH   DDLGKGG+E SK TGNAGGR+ACG+IG+
Sbjct:    3 MKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESKKTGNAGGRLACGVIGI 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_CEBAP (Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SOD1 PE=2 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 2.087e-39
Identity = 81/150 (54.00%), Postives = 99/150 (66.00%), Query Frame = -2
Query:  156 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 602
            +KAV VL G   V+GT++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG PEDE RH            G A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    3 MKAVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_SHEEP (Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.726e-39
Identity = 81/148 (54.73%), Postives = 96/148 (64.86%), Query Frame = -2
Query:  156 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 599
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH            G A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAGGR+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIRFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGGRLACGVIGI 150          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_BOSMU (Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens GN=SOD1 PE=2 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 4.650e-39
Identity = 80/148 (54.05%), Postives = 96/148 (64.86%), Query Frame = -2
Query:  156 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 599
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH            G A   +VD+ I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAVVDIVDSLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_CARCR (Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 6.073e-39
Identity = 81/161 (50.31%), Postives = 98/161 (60.87%), Query Frame = -2
Query:  156 VKAVAVLGGT------------EGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 602
            VKAV VL G             E VKG + F Q+G+GP T+SGS++GL  G HGFHVH  GD TNGC S G HFNP GK HG P+D  RH            G A   + D+ I L+G  SIIGR +VVH   DDLGKGG++ S  TGNAG R+ACG++G+
Sbjct:    4 VKAVCVLKGEDPVKEPVKGPVKEPVKGIIYFEQQGNGPVTLSGSITGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPPGKNHGGPQDNERHVGDLGNVIANKEGVAEVCIKDSLISLTGSQSIIGRTMVVHEKEDDLGKGGNDESLKTGNAGSRLACGVVGI 164          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_ASPJA (Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergillus japonicus GN=sodC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.073e-39
Identity = 77/111 (69.37%), Postives = 84/111 (75.68%), Query Frame = -2
Query:  150 HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 482
            HGFHVHALGDTTNGCMSTGPHFNP GKEHG P+DENRHA           G A   V D+QIPL+G +SIIGRAVVVHADPDDLGKGGHELSKTTGN+   +     G+QG
Sbjct:    8 HGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNSNSSMDSCAHGIQG 118          
BLAST of CN189248 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.036e-38
Identity = 77/148 (52.03%), Postives = 96/148 (64.86%), Query Frame = -2
Query:  156 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 599
            KAV VL G   V+GT+ F  +G+    V+G++ GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH            G AT  + D+ I LSG +SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIYFELKGEKTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 151          
The following BLAST results are available for this feature:
BLAST of CN189248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_DANRE1.888e-4055.70Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod... [more]
SODC_MACMU3.220e-4054.67Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=... [more]
SODC_MACFU3.220e-4054.67Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fus... [more]
SODC_MACFA3.220e-4054.67Superoxide dismutase [Cu-Zn] OS=Macaca fasciculari... [more]
SODC_CEBAP2.087e-3954.00Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SO... [more]
SODC_SHEEP2.726e-3954.73Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1... [more]
SODC_BOSMU4.650e-3954.05Superoxide dismutase [Cu-Zn] OS=Bos mutus grunnien... [more]
SODC_CARCR6.073e-3950.31Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE... [more]
SODC_ASPJA6.073e-3969.37Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergi... [more]
SODC_PIG1.036e-3852.03Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001I21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189248 ID=CN189248; Name=CN189248; organism=Citrus sinensis; type=EST; length=636bp
TTTTTTTTTTTTTTTATCCAACAAAGTTTTAGATTTCTCTTATTCAAGAT
CATAGTCTTGAAAAGTCACACTCAAGCATATATGGACTATAATGCACTCA
AAACATCATATCAAATGAATTTATTATTGTCCGATGAGATGCGGCTTCAT
CCTTGGAGGCCAATGATGCCGCAAGCTACTCTGCCACCAGCATTTCCAGT
GGTTTTGCTCAGCTCATGACCGCCCTTGCCAAGATCATCGGGATCTGCGT
GGACTACAACAGCCCTTCCAATAATGGAATTTGGTCCAGAAAGAGGAATC
TGATTGTCAACAACTGTAAAAGTAGCAGTACCATCATCACCAACATTGAC
ATTTCCTAAGTCACCAGCATGACGATTCTCATCCTCTGGAGGTCCATGTT
CTTTTCCAGCAGGGTTAAAGTGGGGTCCGGTAGACATGCAACCATTTGTT
GTGTCTCCAAGAGCATGAACATGGAATCCATGAGGACCAGGCTTGAGACC
AGAGAGGCTTCCTGATACAGTTGTTGGACCATCTCCTTCCTGGGAAAAGG
AAACAGTTCCCTTGACACCCTCAGTTCCACCAAGAACTGCAACTGCTTTC
ACCATTGTGCTGTGTGATTTTTTATGATGGTCTACT
back to top