EY676438

Overview
NameEY676438
Unique NameEY676438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSEA7 (Co-chaperone protein hscB homolog OS=Pseudomonas aeruginosa (strain PA7) GN=hscB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.885e-36
Identity = 66/95 (69.47%), Postives = 80/95 (84.21%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +G PCHFA F+LQP+F +DL++L  RYREL R VHPDRFADA EREQRLALE++A LN+AYQTLK+ P+RA YLL + GRELPLE TVQDP+ L+
Sbjct:    1 MGKPCHFAQFDLQPTFLVDLDELGRRYRELVRSVHPDRFADAPEREQRLALERAAQLNDAYQTLKSAPRRALYLLTLNGRELPLEATVQDPEFLL 95          

HSP 2 Score: 31.187 bits (69), Expect = 4.885e-36
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADL 357
            LQQMQ  EEL+ELQD ADL
Sbjct:   95 LQQMQLREELEELQDSADL 113          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSEAE (Co-chaperone protein hscB homolog OS=Pseudomonas aeruginosa GN=hscB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.290e-36
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +G PCHFA F+LQP+F +DL++L  RYREL R VHPDRFADA EREQRLALE++A LNEAYQTLK+ P+RA YLL + G ELPLE TVQDP+ L+
Sbjct:    1 MGKPCHFAQFDLQPAFLVDLDELGQRYRELVRSVHPDRFADAPEREQRLALERAAQLNEAYQTLKSAPRRALYLLTLSGHELPLEATVQDPEFLL 95          

HSP 2 Score: 31.187 bits (69), Expect = 8.290e-36
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADL 357
            LQQMQ  EEL+ELQD ADL
Sbjct:   95 LQQMQLREELEELQDSADL 113          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSEAB (Co-chaperone protein hscB homolog OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hscB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.290e-36
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +G PCHFA F+LQP+F +DL++L  RYREL R VHPDRFADA EREQRLALE++A LNEAYQTLK+ P+RA YLL + G ELPLE TVQDP+ L+
Sbjct:    1 MGKPCHFAQFDLQPAFLVDLDELGQRYRELVRSVHPDRFADAPEREQRLALERAAQLNEAYQTLKSAPRRALYLLTLSGHELPLEATVQDPEFLL 95          

HSP 2 Score: 31.187 bits (69), Expect = 8.290e-36
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADL 357
            LQQMQ  EEL+ELQD ADL
Sbjct:   95 LQQMQLREELEELQDSADL 113          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSEA8 (Co-chaperone protein hscB homolog OS=Pseudomonas aeruginosa (strain LESB58) GN=hscB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.290e-36
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +G PCHFA F+LQP+F +DL++L  RYREL R VHPDRFADA EREQRLALE++A LNEAYQTLK+ P+RA YLL + G ELPLE TVQDP+ L+
Sbjct:    1 MGKPCHFAQFDLQPAFLVDLDELGQRYRELVRSVHPDRFADAPEREQRLALERAAQLNEAYQTLKSAPRRALYLLTLSGHELPLEATVQDPEFLL 95          

HSP 2 Score: 31.187 bits (69), Expect = 8.290e-36
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADL 357
            LQQMQ  EEL+ELQD ADL
Sbjct:   95 LQQMQLREELEELQDSADL 113          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_AZOVD (Co-chaperone protein hscB homolog OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=hscB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.623e-32
Identity = 64/95 (67.37%), Postives = 76/95 (80.00%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +G   HFALF+L+P FRLD ++LA RYREL R VHPDRFA A EREQRLALE++A LNEAYQTLK+P +RARYLL++ G EL  E TVQDP  L+
Sbjct:    1 MGNASHFALFDLEPDFRLDQDRLAVRYRELVRRVHPDRFAGAPEREQRLALEEAARLNEAYQTLKSPSQRARYLLSLQGEELSQETTVQDPAFLM 95          

HSP 2 Score: 29.261 bits (64), Expect = 8.623e-32
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADL 357
            +QQM+  EEL+ELQD ADL
Sbjct:   95 MQQMELREELQELQDSADL 113          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_AZOVI (Co-chaperone protein hscB homolog OS=Azotobacter vinelandii GN=hscB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.230e-31
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            HFALF+L+P FRLD ++LA RYREL R VHPDRFA A EREQRLALE++A LNEAYQTLK+P +RARYLL++ G EL  E TVQDP  L+
Sbjct:    4 HFALFDLEPDFRLDQDRLAVRYRELVRRVHPDRFAGAPEREQRLALEEAARLNEAYQTLKSPSQRARYLLSLQGEELSQETTVQDPAFLM 93          

HSP 2 Score: 29.261 bits (64), Expect = 3.230e-31
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADL 357
            +QQM+  EEL+ELQD ADL
Sbjct:   93 MQQMELREELQELQDSADL 111          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_SHEPA (Co-chaperone protein hscB homolog OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=hscB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.363e-19
Identity = 45/82 (54.88%), Postives = 64/82 (78.05%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVT 278
            +F LF L PS+ +D   LA RYREL R VHPD+FA+ASE+++RL+++++A +N+A+QTLKNP +RA +LLA+ G EL  E T
Sbjct:    3 YFELFSLLPSYDVDTALLADRYRELQRAVHPDKFANASEQDKRLSVQRTAQINDAFQTLKNPIQRAEHLLALKGLELSHEST 84          

HSP 2 Score: 22.7126 bits (47), Expect = 3.363e-19
Identity = 8/18 (44.44%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEAD 354
            +QQM W E L+E++   D
Sbjct:   93 MQQMDWRESLEEIKHSDD 110          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_SHEHH (Co-chaperone protein hscB homolog OS=Shewanella halifaxensis (strain HAW-EB4) GN=hscB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.689e-19
Identity = 44/82 (53.66%), Postives = 63/82 (76.83%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVT 278
            +F LF L PS+ +D   LA RYREL R VHPD+FA+ASE+++RL+++++A +N+A+QTLKNP +RA +LL + G EL  E T
Sbjct:    3 YFELFSLLPSYDVDTALLAERYRELQRAVHPDKFANASEQDKRLSVQRTAQINDAFQTLKNPIQRAEHLLTLKGLELSHEST 84          

HSP 2 Score: 23.483 bits (49), Expect = 5.689e-19
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEAD 354
            +QQM+W E L+E++   D
Sbjct:   93 MQQMEWRESLEEIKHSDD 110          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_SHELP (Co-chaperone protein hscB homolog OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=hscB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.755e-18
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE-VTVQD 287
            +F LF L PSF LD   L+ RYREL R VHPD+FA+ASE+++RLA++ +A +N+ Y TLK+P  RA ++L++ G +L  E  TV+D
Sbjct:    3 YFELFSLSPSFELDTAVLSERYRELQRAVHPDKFANASEQDKRLAVQHTAQVNDGYNTLKHPISRAEHMLSLKGIDLSHESTTVKD 88          

HSP 2 Score: 23.8682 bits (50), Expect = 2.755e-18
Identity = 8/15 (53.33%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  301 LQQMQWPEELKELQD 345
            +QQM+W E L+E+ D
Sbjct:   93 MQQMEWREALEEISD 107          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_COLP3 (Co-chaperone protein hscB homolog OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=hscB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 42/80 (52.50%), Postives = 62/80 (77.50%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE 272
            +F LF ++ SF +DL+QL++ Y+ L + VHPD+FA ASE+EQR+A+++SA +N+AYQTLKNP +RA Y+L     E+P E
Sbjct:    3 YFQLFNIEVSFDVDLQQLSSSYQTLQKTVHPDKFAHASEQEQRIAVQKSAQINDAYQTLKNPLQRAEYILVQRSVEMPNE 82          
The following BLAST results are available for this feature:
BLAST of EY676438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
HSCB_PSEA74.885e-3669.47Co-chaperone protein hscB homolog OS=Pseudomonas a... [more]
HSCB_PSEAE8.290e-3669.47Co-chaperone protein hscB homolog OS=Pseudomonas a... [more]
HSCB_PSEAB8.290e-3669.47Co-chaperone protein hscB homolog OS=Pseudomonas a... [more]
HSCB_PSEA88.290e-3669.47Co-chaperone protein hscB homolog OS=Pseudomonas a... [more]
HSCB_AZOVD8.623e-3267.37Co-chaperone protein hscB homolog OS=Azotobacter v... [more]
HSCB_AZOVI3.230e-3170.00Co-chaperone protein hscB homolog OS=Azotobacter v... [more]
HSCB_SHEPA3.363e-1954.88Co-chaperone protein hscB homolog OS=Shewanella pe... [more]
HSCB_SHEHH5.689e-1953.66Co-chaperone protein hscB homolog OS=Shewanella ha... [more]
HSCB_SHELP2.755e-1851.16Co-chaperone protein hscB homolog OS=Shewanella lo... [more]
HSCB_COLP33.641e-1852.50Co-chaperone protein hscB homolog OS=Colwellia psy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-F08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676438 ID=EY676438; Name=EY676438; organism=Citrus sinensis; type=EST; length=756bp
AACATCTGAGGCTGATTGTGGGTACTCCTTGTCATTTCGCTTTATTCGAG
CTGCAGCCGAGTTTTCGACTGGACCTTGAACAGCTTGCCACGCGCTACCG
TGAACTGGCGCGTGGGGTGCATCCGGACCGCTTTGCTGACGCTTCCGAGC
GTGAGCAACGCTTGGCGCTGGAGCAATCAGCCAGCCTCAACGAAGCCTAT
CAGACGCTCAAGAACCCTCCCAAACGCGCGCGCTACCTGCTCGCCATGGG
CGGTCGCGAGCTGCCGCTTGAAGTCACGGTCCAGGACCCTGATAGTCTGA
TTGCAGCAGATGCAATGGCCCGAGGAGCTCAAAGAACTGCAGGACGAGGC
CGATCTGGGCCGGAATCGCGGTCTTTCAGCCGCCGTCTGAAAGTGGGCCC
AGGATGAAACTCCAACGAAAGCCTTTCCCCACCCGGTTGGGGAGGACCCA
CCGCAACCTGGGACAGGGCCAAACCCCGGATGCCGGGCCCATGGCCATTT
CCTTCCAAAAACCCCCCTTACAAATGGCCCCAATTTAAAAAAACGCCCCC
CAAAAATAAAACCCGTGGCCCCCCCGGTTGGCCCCCCCGGAAAAAAAAAA
AAATTCCCGGTTATCCCTGGCCCCCACTGGAAAAATACGCCAAAACCCGG
TGTCAAATTCCCCCTCAACCCCCACCACCCCCCTCCCCGGGGGGGGGGGG
GAATTAAAATTGGGGCAACAACATAAATTTTCCGGGGGGGGCCCTCTATT
TGTTGC
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