EY676438

Overview
NameEY676438
Unique NameEY676438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_BORPA (Co-chaperone protein hscB homolog OS=Bordetella parapertussis GN=hscB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDSLI 302
            HF+LF L   F LD  QL   +R +A  VHPDR+A AS  E+R+A++ +A  NEAY+ L++P  RARYL    G +L  E  T  DP  L+
Sbjct:    6 HFSLFGLPARFALDPVQLEQAWRAVAARVHPDRYATASAAERRVAMQWAARANEAYRQLRDPMLRARYLCEQAGVDLQTESNTAMDPAFLM 96          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_BORBR (Co-chaperone protein hscB homolog OS=Bordetella bronchiseptica GN=hscB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQDPDSLI 302
            HF+LF L   F LD  QL   +R +A  VHPDR+A AS  E+R+A++ +A  NEAY+ L++P  RARYL    G +L  E  T  DP  L+
Sbjct:    6 HFSLFGLPTRFALDPVQLEQAWRAVAARVHPDRYATASAAERRVAMQWAARANEAYRQLRDPMLRARYLCEQAGVDLQTESNTAMDPAFLM 96          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_BURXL (Co-chaperone protein hscB homolog OS=Burkholderia xenovorans (strain LB400) GN=hscB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE 272
            HF LF+L   F LD   L   YR +   VHPDRFA A + ++R+A++ +   NEAYQTL++P KRA YLL + G ++  E
Sbjct:    8 HFDLFDLPAQFALDASALDHAYRTVQAQVHPDRFAAAGDAQKRIAMQWATRTNEAYQTLRDPLKRATYLLHLRGIDVGAE 87          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_BURPP (Co-chaperone protein hscB homolog OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=hscB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPL-EVTVQDPDSLI 302
            HF LF+L   F LD   L   YR +   VHPDRFA A + ++R+A++ +   NEAYQTL++P KRA YLL + G ++   E T  +P  L+
Sbjct:    8 HFDLFDLPAQFALDASALDHAYRTVQAQVHPDRFAAAGDAQKRIAMQWATRTNEAYQTLRDPLKRATYLLHLRGIDVGAHENTAMEPAFLM 98          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_BURTA (Co-chaperone protein hscB homolog OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=hscB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE 272
            HF LF L   F LD   L   YR +   VHPDRFA A + ++R+A++ +   NEAYQTL++P KRA YLL + G ++  E
Sbjct:    8 HFELFHLPAQFALDEPTLDAAYRAVQSQVHPDRFAAAGDAQKRVAMQWATRANEAYQTLRDPLKRATYLLHLRGVDVGAE 87          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_BURM1 (Co-chaperone protein hscB homolog OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=hscB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE 272
            HF LF L   F LD   L   YR +   VHPDRFA A + ++R+A++ +   NEAY+TL++P KRA YLL++ G ++  E
Sbjct:    8 HFDLFHLPAQFALDEAALDAAYRAVQTQVHPDRFAAAGDAQKRIAMQWATRANEAYRTLRDPLKRATYLLSLRGVDIGAE 87          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_BURCJ (Co-chaperone protein hscB homolog OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=hscB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE 272
            HF LF L   F LD   L   YR +   VHPDRFA A + ++R+A++ +   NEAY+TL++P KRA YLL++ G ++  E
Sbjct:    8 HFDLFHLPAQFALDETALDAAYRTVQTQVHPDRFAAAGDAQKRIAMQWATRANEAYRTLRDPLKRASYLLSLRGVDIGAE 87          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PECCP (Co-chaperone protein hscB OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=hscB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 35/74 (47.30%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGG 254
            +F LF L   + +D   LA+R++ L R  HPDR+A + ERE+ LA++Q+A++N AYQ LK+P KRA Y+L++ G
Sbjct:    3 YFTLFGLPIRYDVDGGLLASRFQALQRQFHPDRYAASPERERMLAVQQAATINNAYQALKHPLKRAEYMLSLHG 76          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_BURPS (Co-chaperone protein hscB homolog OS=Burkholderia pseudomallei GN=hscB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE 272
            HF LF L   F LD   L   YR +   VHPDRFA A + ++R+A++ +   NEAYQTL++P KRA YLL + G ++  E
Sbjct:    8 HFDLFHLPARFALDEPTLDAAYRAVQSQVHPDRFAAAGDAQKRIAMQWATRANEAYQTLRDPLKRATYLLHLRGVDVGAE 87          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_BURP6 (Co-chaperone protein hscB homolog OS=Burkholderia pseudomallei (strain 668) GN=hscB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE 272
            HF LF L   F LD   L   YR +   VHPDRFA A + ++R+A++ +   NEAYQTL++P KRA YLL + G ++  E
Sbjct:    8 HFDLFHLPARFALDEPTLDAAYRAVQSQVHPDRFAAAGDAQKRIAMQWATRANEAYQTLRDPLKRATYLLHLRGVDVGAE 87          
The following BLAST results are available for this feature:
BLAST of EY676438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
HSCB_BORPA4.605e-1346.15Co-chaperone protein hscB homolog OS=Bordetella pa... [more]
HSCB_BORBR4.605e-1346.15Co-chaperone protein hscB homolog OS=Bordetella br... [more]
HSCB_BURXL7.855e-1346.25Co-chaperone protein hscB homolog OS=Burkholderia ... [more]
HSCB_BURPP7.855e-1343.96Co-chaperone protein hscB homolog OS=Burkholderia ... [more]
HSCB_BURTA1.750e-1246.25Co-chaperone protein hscB homolog OS=Burkholderia ... [more]
HSCB_BURM11.750e-1245.00Co-chaperone protein hscB homolog OS=Burkholderia ... [more]
HSCB_BURCJ1.750e-1245.00Co-chaperone protein hscB homolog OS=Burkholderia ... [more]
HSCB_PECCP2.286e-1247.30Co-chaperone protein hscB OS=Pectobacterium caroto... [more]
HSCB_BURPS2.286e-1246.25Co-chaperone protein hscB homolog OS=Burkholderia ... [more]
HSCB_BURP62.286e-1246.25Co-chaperone protein hscB homolog OS=Burkholderia ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-F08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676438 ID=EY676438; Name=EY676438; organism=Citrus sinensis; type=EST; length=756bp
AACATCTGAGGCTGATTGTGGGTACTCCTTGTCATTTCGCTTTATTCGAG
CTGCAGCCGAGTTTTCGACTGGACCTTGAACAGCTTGCCACGCGCTACCG
TGAACTGGCGCGTGGGGTGCATCCGGACCGCTTTGCTGACGCTTCCGAGC
GTGAGCAACGCTTGGCGCTGGAGCAATCAGCCAGCCTCAACGAAGCCTAT
CAGACGCTCAAGAACCCTCCCAAACGCGCGCGCTACCTGCTCGCCATGGG
CGGTCGCGAGCTGCCGCTTGAAGTCACGGTCCAGGACCCTGATAGTCTGA
TTGCAGCAGATGCAATGGCCCGAGGAGCTCAAAGAACTGCAGGACGAGGC
CGATCTGGGCCGGAATCGCGGTCTTTCAGCCGCCGTCTGAAAGTGGGCCC
AGGATGAAACTCCAACGAAAGCCTTTCCCCACCCGGTTGGGGAGGACCCA
CCGCAACCTGGGACAGGGCCAAACCCCGGATGCCGGGCCCATGGCCATTT
CCTTCCAAAAACCCCCCTTACAAATGGCCCCAATTTAAAAAAACGCCCCC
CAAAAATAAAACCCGTGGCCCCCCCGGTTGGCCCCCCCGGAAAAAAAAAA
AAATTCCCGGTTATCCCTGGCCCCCACTGGAAAAATACGCCAAAACCCGG
TGTCAAATTCCCCCTCAACCCCCACCACCCCCCTCCCCGGGGGGGGGGGG
GAATTAAAATTGGGGCAACAACATAAATTTTCCGGGGGGGGCCCTCTATT
TGTTGC
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