EY676438

Overview
NameEY676438
Unique NameEY676438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSEA6 (Co-chaperone protein hscB homolog OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=hscB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.152e-15
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE-VTVQD 287
            +FALF L PSF +D   LA  Y++L +  HPDRFA ASER++ +AL+++A +N+ YQ LK P  RA ++L + G EL  E  T+QD
Sbjct:    3 YFALFNLTPSFDVDKAALAATYQQLQKLTHPDRFATASERDKLIALQKNAQVNDGYQVLKTPLSRAEHMLELRGVELQHEQKTMQD 88          

HSP 2 Score: 23.483 bits (49), Expect = 1.152e-15
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEAD 354
            +QQM+W E+L + Q  +D
Sbjct:   93 MQQMEWREQLDDAQHASD 110          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_VIBHB (Co-chaperone protein hscB homolog OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hscB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.153e-15
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE-VTVQDP 290
            HF LF L   F+LD   L++++REL +  HPD FA ASER++ +A++++A +N+AYQ LK+P  RA Y+LA  G E+  E  T+QDP
Sbjct:    3 HFELFGLPSQFQLDGSLLSSQFRELQKRFHPDNFATASERDRLMAVQKAAQINDAYQVLKHPISRAEYILAENGTEIRGEQQTMQDP 89          

HSP 2 Score: 21.1718 bits (43), Expect = 1.153e-15
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEAD 354
            ++QM+  EEL+++ D +D
Sbjct:   93 MEQMELREELEDIADSSD 110          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PHOPR (Co-chaperone protein hscB homolog OS=Photobacterium profundum GN=hscB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.498e-15
Identity = 42/91 (46.15%), Postives = 63/91 (69.23%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLE-VTVQDPDSLI 302
            HF LF L   F LD   L+T++REL R  HPD FA ASER++ ++++++A +N+A+QTLKNP  RA Y+L+    ++  E  T+QDP+ L+
Sbjct:    3 HFELFRLPFQFELDGGLLSTQFRELQRRFHPDNFATASERDRLMSVQKAAQINDAFQTLKNPISRAEYMLSEQDMDIRGEQKTLQDPEFLM 93          

HSP 2 Score: 22.3274 bits (46), Expect = 1.498e-15
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEAD 354
            +QQM+  EEL+++ D +D
Sbjct:   93 MQQMELREELEDISDASD 110          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_YERPY (Co-chaperone protein hscB OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=hscB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGREL 263
            +F LF L   + +D  QL TRY+EL R  HPDRFA   ERE+  +++Q+A++N+AYQTLK+P KRA Y+L++ G +L
Sbjct:    3 YFTLFGLPARYLIDGNQLTTRYQELQRQFHPDRFATQPERERLASMQQAATINDAYQTLKHPLKRAEYMLSLQGFDL 79          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_YERPS (Co-chaperone protein hscB OS=Yersinia pseudotuberculosis GN=hscB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGREL 263
            +F LF L   + +D  QL TRY+EL R  HPDRFA   ERE+  +++Q+A++N+AYQTLK+P KRA Y+L++ G +L
Sbjct:    3 YFTLFGLPARYLIDGNQLTTRYQELQRQFHPDRFATQPERERLASMQQAATINDAYQTLKHPLKRAEYMLSLQGFDL 79          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_YERPP (Co-chaperone protein hscB OS=Yersinia pestis (strain Pestoides F) GN=hscB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGREL 263
            +F LF L   + +D  QL TRY+EL R  HPDRFA   ERE+  +++Q+A++N+AYQTLK+P KRA Y+L++ G +L
Sbjct:    3 YFTLFGLPARYLIDGNQLTTRYQELQRQFHPDRFATQPERERLASMQQAATINDAYQTLKHPLKRAEYMLSLQGFDL 79          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_YERPN (Co-chaperone protein hscB OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=hscB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGREL 263
            +F LF L   + +D  QL TRY+EL R  HPDRFA   ERE+  +++Q+A++N+AYQTLK+P KRA Y+L++ G +L
Sbjct:    3 YFTLFGLPARYLIDGNQLTTRYQELQRQFHPDRFATQPERERLASMQQAATINDAYQTLKHPLKRAEYMLSLQGFDL 79          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_YERPG (Co-chaperone protein hscB OS=Yersinia pestis bv. Antiqua (strain Angola) GN=hscB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGREL 263
            +F LF L   + +D  QL TRY+EL R  HPDRFA   ERE+  +++Q+A++N+AYQTLK+P KRA Y+L++ G +L
Sbjct:    3 YFTLFGLPARYLIDGNQLTTRYQELQRQFHPDRFATQPERERLASMQQAATINDAYQTLKHPLKRAEYMLSLQGFDL 79          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_YERPE (Co-chaperone protein hscB OS=Yersinia pestis GN=hscB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGREL 263
            +F LF L   + +D  QL TRY+EL R  HPDRFA   ERE+  +++Q+A++N+AYQTLK+P KRA Y+L++ G +L
Sbjct:    3 YFTLFGLPARYLIDGNQLTTRYQELQRQFHPDRFATQPERERLASMQQAATINDAYQTLKHPLKRAEYMLSLQGFDL 79          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_YERPB (Co-chaperone protein hscB OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=hscB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 3
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGREL 263
            +F LF L   + +D  QL TRY+EL R  HPDRFA   ERE+  +++Q+A++N+AYQTLK+P KRA Y+L++ G +L
Sbjct:    3 YFTLFGLPARYLIDGNQLTTRYQELQRQFHPDRFATQPERERLASMQQAATINDAYQTLKHPLKRAEYMLSLQGFDL 79          
The following BLAST results are available for this feature:
BLAST of EY676438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
HSCB_PSEA61.152e-1548.84Co-chaperone protein hscB homolog OS=Pseudoalterom... [more]
HSCB_VIBHB1.153e-1548.28Co-chaperone protein hscB homolog OS=Vibrio harvey... [more]
HSCB_PHOPR1.498e-1546.15Co-chaperone protein hscB homolog OS=Photobacteriu... [more]
HSCB_YERPY2.209e-1550.65Co-chaperone protein hscB OS=Yersinia pseudotuberc... [more]
HSCB_YERPS2.209e-1550.65Co-chaperone protein hscB OS=Yersinia pseudotuberc... [more]
HSCB_YERPP2.209e-1550.65Co-chaperone protein hscB OS=Yersinia pestis (stra... [more]
HSCB_YERPN2.209e-1550.65Co-chaperone protein hscB OS=Yersinia pestis bv. A... [more]
HSCB_YERPG2.209e-1550.65Co-chaperone protein hscB OS=Yersinia pestis bv. A... [more]
HSCB_YERPE2.209e-1550.65Co-chaperone protein hscB OS=Yersinia pestis GN=hs... [more]
HSCB_YERPB2.209e-1550.65Co-chaperone protein hscB OS=Yersinia pseudotuberc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-F08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676438 ID=EY676438; Name=EY676438; organism=Citrus sinensis; type=EST; length=756bp
AACATCTGAGGCTGATTGTGGGTACTCCTTGTCATTTCGCTTTATTCGAG
CTGCAGCCGAGTTTTCGACTGGACCTTGAACAGCTTGCCACGCGCTACCG
TGAACTGGCGCGTGGGGTGCATCCGGACCGCTTTGCTGACGCTTCCGAGC
GTGAGCAACGCTTGGCGCTGGAGCAATCAGCCAGCCTCAACGAAGCCTAT
CAGACGCTCAAGAACCCTCCCAAACGCGCGCGCTACCTGCTCGCCATGGG
CGGTCGCGAGCTGCCGCTTGAAGTCACGGTCCAGGACCCTGATAGTCTGA
TTGCAGCAGATGCAATGGCCCGAGGAGCTCAAAGAACTGCAGGACGAGGC
CGATCTGGGCCGGAATCGCGGTCTTTCAGCCGCCGTCTGAAAGTGGGCCC
AGGATGAAACTCCAACGAAAGCCTTTCCCCACCCGGTTGGGGAGGACCCA
CCGCAACCTGGGACAGGGCCAAACCCCGGATGCCGGGCCCATGGCCATTT
CCTTCCAAAAACCCCCCTTACAAATGGCCCCAATTTAAAAAAACGCCCCC
CAAAAATAAAACCCGTGGCCCCCCCGGTTGGCCCCCCCGGAAAAAAAAAA
AAATTCCCGGTTATCCCTGGCCCCCACTGGAAAAATACGCCAAAACCCGG
TGTCAAATTCCCCCTCAACCCCCACCACCCCCCTCCCCGGGGGGGGGGGG
GAATTAAAATTGGGGCAACAACATAAATTTTCCGGGGGGGGCCCTCTATT
TGTTGC
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