EY676438

Overview
NameEY676438
Unique NameEY676438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_ECOL6 (Co-chaperone protein hscB OS=Escherichia coli O6 GN=hscB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 3 
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQD 287
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRD 88
[Close]
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_ECOL5 (Co-chaperone protein hscB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=hscB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 3 
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQD 287
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRD 88
[Close]
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_ECOK1 (Co-chaperone protein hscB OS=Escherichia coli O1:K1 / APEC GN=hscB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 3 
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQD 287
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRD 88
[Close]
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_ECOHS (Co-chaperone protein hscB OS=Escherichia coli O9:H4 (strain HS) GN=hscB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 3 
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQD 287
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRD 88
[Close]
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_ECODH (Co-chaperone protein hscB OS=Escherichia coli (strain K12 / DH10B) GN=hscB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 3 
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQD 287
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRD 88
[Close]
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_ECOBW (Co-chaperone protein hscB OS=Escherichia coli (strain K12 / BW2952) GN=hscB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 3 
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQD 287
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRD 88
[Close]
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_ECO8A (Co-chaperone protein hscB OS=Escherichia coli O8 (strain IAI1) GN=hscB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 3 
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQD 287
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRD 88
[Close]
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_ECO81 (Co-chaperone protein hscB OS=Escherichia coli O81 (strain ED1a) GN=hscB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 3 
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQD 287
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRD 88
[Close]
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_ECO7I (Co-chaperone protein hscB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=hscB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 3 
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQD 287
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRD 88
[Close]
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_ECO5E (Co-chaperone protein hscB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=hscB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 3 
Query:   33 HFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEV-TVQD 287
            +F LF L   ++LD + L+ R+++L R  HPD+FA  S+ EQ  A++QSA++N+A+QTL++P  RA YLL++ G +L  E  TV+D
Sbjct:    3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRD 88
The following BLAST results are available for this feature:
BLAST of EY676438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
HSCB_ECOL65.440e-1445.35Co-chaperone protein hscB OS=Escherichia coli O6 G... [more]
HSCB_ECOL55.440e-1445.35Co-chaperone protein hscB OS=Escherichia coli O6:K... [more]
HSCB_ECOK15.440e-1445.35Co-chaperone protein hscB OS=Escherichia coli O1:K... [more]
HSCB_ECOHS5.440e-1445.35Co-chaperone protein hscB OS=Escherichia coli O9:H... [more]
HSCB_ECODH5.440e-1445.35Co-chaperone protein hscB OS=Escherichia coli (str... [more]
HSCB_ECOBW5.440e-1445.35Co-chaperone protein hscB OS=Escherichia coli (str... [more]
HSCB_ECO8A5.440e-1445.35Co-chaperone protein hscB OS=Escherichia coli O8 (... [more]
HSCB_ECO815.440e-1445.35Co-chaperone protein hscB OS=Escherichia coli O81 ... [more]
HSCB_ECO7I5.440e-1445.35Co-chaperone protein hscB OS=Escherichia coli O7:K... [more]
HSCB_ECO5E5.440e-1445.35Co-chaperone protein hscB OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-F08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676438 ID=EY676438; Name=EY676438; organism=Citrus sinensis; type=EST; length=756bp
AACATCTGAGGCTGATTGTGGGTACTCCTTGTCATTTCGCTTTATTCGAG
CTGCAGCCGAGTTTTCGACTGGACCTTGAACAGCTTGCCACGCGCTACCG
TGAACTGGCGCGTGGGGTGCATCCGGACCGCTTTGCTGACGCTTCCGAGC
GTGAGCAACGCTTGGCGCTGGAGCAATCAGCCAGCCTCAACGAAGCCTAT
CAGACGCTCAAGAACCCTCCCAAACGCGCGCGCTACCTGCTCGCCATGGG
CGGTCGCGAGCTGCCGCTTGAAGTCACGGTCCAGGACCCTGATAGTCTGA
TTGCAGCAGATGCAATGGCCCGAGGAGCTCAAAGAACTGCAGGACGAGGC
CGATCTGGGCCGGAATCGCGGTCTTTCAGCCGCCGTCTGAAAGTGGGCCC
AGGATGAAACTCCAACGAAAGCCTTTCCCCACCCGGTTGGGGAGGACCCA
CCGCAACCTGGGACAGGGCCAAACCCCGGATGCCGGGCCCATGGCCATTT
CCTTCCAAAAACCCCCCTTACAAATGGCCCCAATTTAAAAAAACGCCCCC
CAAAAATAAAACCCGTGGCCCCCCCGGTTGGCCCCCCCGGAAAAAAAAAA
AAATTCCCGGTTATCCCTGGCCCCCACTGGAAAAATACGCCAAAACCCGG
TGTCAAATTCCCCCTCAACCCCCACCACCCCCCTCCCCGGGGGGGGGGGG
GAATTAAAATTGGGGCAACAACATAAATTTTCCGGGGGGGGCCCTCTATT
TGTTGC
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