CN189231

Overview
NameCN189231
Unique NameCN189231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:522..1193. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189231 vs. ExPASy Swiss-Prot
Match: CH60_ALKOO (60 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groL PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.262e-33
Identity = 76/141 (53.90%), Postives = 101/141 (71.63%), Query Frame = -1
Query:  256 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE--DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQ 672
            GAATETEL++RKLRIEDA NAT A +EEG+V GGGA+LVH+   +PA++  LE  + DER G  I+++AL  P   IA NA            +SE   G++A+T+KY NM++AG++DP KVTR ALQNAASV+ M+LTT+
Sbjct:  380 GAATETELKERKLRIEDALNATRAGVEEGMVAGGGASLVHV---IPAVEALLETTEGDERTGVKIIRRALEEPLRQIAANAGLEGSVIVEKVMSSEKGIGFDALTEKYVNMIEAGIVDPTKVTRSALQNAASVSAMLLTTE 517          
BLAST of CN189231 vs. ExPASy Swiss-Prot
Match: CH602_PROM1 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL1A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.484e-33
Identity = 78/144 (54.17%), Postives = 98/144 (68.06%), Query Frame = -1
Query:  250 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE---DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 672
            GAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+   PA++D        +E +GA+IV+ AL +P   IA NA           K+     GYNA T +Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  380 GAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLA---PALEDWSSTNLSGEELIGANIVEAALTSPLMRIAENAGANGAVVAENVKSKPVNDGYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CN189231 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 140.198 bits (352), Expect = 9.484e-33
Identity = 82/145 (56.55%), Postives = 100/145 (68.97%), Query Frame = -1
Query:  250 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD----KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 672
            GAATETE++DRKLR+EDA NAT AA+EEGIVPGGG  L HL+   P ++D     L+D +E  GA IV +AL AP   IA NA           K  E+  GYNA + +Y +ML AG++DPAKVTR ALQNAAS+AGMVLTT+ I
Sbjct:  380 GAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLA---PQLEDWATGNLKD-EELTGALIVARALPAPLKRIAENAGQNGAVISERVKEKEFNVGYNAASLEYVDMLAAGIVDPAKVTRSALQNAASIAGMVLTTECI 520          
BLAST of CN189231 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.239e-32
Identity = 76/141 (53.90%), Postives = 92/141 (65.25%), Query Frame = -1
Query:  250 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 672
            GAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +          +E +GA+IV  AL AP   IA NA           KA  +  GYNA    Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  380 GAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEQWAASTLSGEELIGANIVAAALTAPLMRIAENAGVNGAVVAENVKAKSFNEGYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CN189231 vs. ExPASy Swiss-Prot
Match: CH602_PROMP (60 kDa chaperonin 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groL2 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.239e-32
Identity = 74/141 (52.48%), Postives = 95/141 (67.38%), Query Frame = -1
Query:  250 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 672
            GAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    DK    +E +GA+IV+ +L +P   IA NA           K+  +  G+NA T  Y +M  AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  380 GAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPILKEWADKALSGEELIGANIVEASLTSPLMRIAENAGSNGAVIAENVKSKPFNDGFNAATGDYVDMSAAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CN189231 vs. ExPASy Swiss-Prot
Match: CH602_PROM5 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9515) GN=groL2 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.239e-32
Identity = 74/141 (52.48%), Postives = 95/141 (67.38%), Query Frame = -1
Query:  250 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 672
            GAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +    D     +E +GA+IV+ +L AP   IA NA           K+  +  G+NA T +Y +M  AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  380 GAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPILKEWADATLSGEELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKSKPFNDGFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
BLAST of CN189231 vs. ExPASy Swiss-Prot
Match: CH60_GEMAT (60 kDa chaperonin OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=groL PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.618e-32
Identity = 76/143 (53.15%), Postives = 105/143 (73.43%), Query Frame = -1
Query:  250 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXK-ASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 672
            GAATE E++++K R+EDA +AT AA+EEGIVPGGG AL+  + HV  +KD K+ + DE++G DIV++A+  P  +I  NA           + A E + GYNA+TD YE+++QAGVIDP KVTR ALQNAAS+AG++LTT+A+
Sbjct:  382 GAATEAEMKEKKARVEDALHATRAAVEEGIVPGGGVALIR-AQHV--LKDVKVAERDEQIGVDIVRRAIEEPLRMIVQNAGGEGSIVVEKIRTAKETSFGYNALTDVYEDLVQAGVIDPTKVTRTALQNAASIAGLLLTTEAL 521          
BLAST of CN189231 vs. ExPASy Swiss-Prot
Match: CH60_GALSU (60 kDa chaperonin, chloroplastic OS=Galdieria sulphuraria GN=groL PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.618e-32
Identity = 74/141 (52.48%), Postives = 99/141 (70.21%), Query Frame = -1
Query:  250 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 672
            GAATETE++D+KLR+EDA NAT AAIEEGIVPGGGA LVHL++ +      +   DE +GA IV+K++ AP   I  N            K  +++ GY+A T K+ NM ++G+IDPAKVTR ALQNA+S+AGM+LTT+ +
Sbjct:  381 GAATETEMKDKKLRLEDAINATKAAIEEGIVPGGGATLVHLANDLFNWAKGVLKEDELIGALIVEKSITAPLKRIVQNEGKNGAIVVDEIKNLDFSIGYDASTSKFVNMYESGIIDPAKVTRSALQNASSIAGMILTTECL 521          
BLAST of CN189231 vs. ExPASy Swiss-Prot
Match: CH60_EMIHU (60 kDa chaperonin, chloroplastic OS=Emiliania huxleyi GN=groL PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.618e-32
Identity = 76/141 (53.90%), Postives = 96/141 (68.09%), Query Frame = -1
Query:  250 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 672
            GAATETE++DRKLR+EDA NAT AA+EEGIVPGGG  L+H++  +     +    DE LG  IV+KAL AP   IA NA           K S++  GYNA T++  +M +AG+IDPAKVTR  LQNAAS+A M+LTT+ I
Sbjct:  382 GAATETEMKDRKLRLEDAVNATKAAVEEGIVPGGGTTLIHIAAELLEWVKETLTGDELLGGLIVEKALQAPLKKIALNAGENGSIIVERIKESDFEIGYNAATNEIVDMYEAGIIDPAKVTRSTLQNAASIASMILTTECI 522          
BLAST of CN189231 vs. ExPASy Swiss-Prot
Match: CH601_PROMT (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL2A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.618e-32
Identity = 75/141 (53.19%), Postives = 94/141 (66.67%), Query Frame = -1
Query:  250 GAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 672
            GAATETE++D+KLR+EDA NAT AA+EEGIVPGGG  L HL+  +          +E +GA+IV+ AL +P   IA NA           K+     GYNA T +Y +ML AG++DPAKVTR  LQNAAS+AGMVLTT+ I
Sbjct:  380 GAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALGDWSSSNLSGEELIGANIVEAALTSPLMRIAENAGANGAVVAENVKSKPVNDGYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECI 520          
The following BLAST results are available for this feature:
BLAST of CN189231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ALKOO7.262e-3353.9060 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]
CH602_PROM19.484e-3354.1760 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH601_SYNY39.484e-3356.5560 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH602_SYNPW1.239e-3253.9060 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH602_PROMP1.239e-3252.4860 kDa chaperonin 2 OS=Prochlorococcus marinus sub... [more]
CH602_PROM51.239e-3252.4860 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH60_GEMAT1.618e-3253.1560 kDa chaperonin OS=Gemmatimonas aurantiaca (stra... [more]
CH60_GALSU1.618e-3252.4860 kDa chaperonin, chloroplastic OS=Galdieria sulp... [more]
CH60_EMIHU1.618e-3253.9060 kDa chaperonin, chloroplastic OS=Emiliania huxl... [more]
CH601_PROMT1.618e-3253.1960 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I10_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189231 ID=CN189231; Name=CN189231; organism=Citrus sinensis; type=EST; length=672bp
CCCCTTTTTTCCGCTGCATCTCAGACGGTGAAGAGCAGACAACATTTTAC
AGCAATAATCCAATAATCCCGTACAAAAAAGACACGATTTTATATCAATT
AAGTAAAACTTGTCTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCT
ATAAACCTCCTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGAC
CTTGTGGCGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACA
ATAGCCTGAGTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAA
TGCACATCTTGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGT
TCTCATACTTGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTAGCT
TTCACCTTCTCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTAT
CAGTGATGCAGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATC
GCTCATCTGCATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGAC
AGATGAACCAGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGC
TGCAAAAGTTGCATTCTTGGCATCTTCAATACGGAGTTTACGGTCCTCAA
GCTCAGTTTCTGTGGCAGCTCC
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