EY758015

Overview
NameEY758015
Unique NameEY758015
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY758015 vs. ExPASy Swiss-Prot
Match: H32_TETBO (Histone H3.2 (Fragment) OS=Tetrahymena borealis PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 3 
Query:   66 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 188
            MAR KQTARKSTG +APRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARAKQTARKSTGAEAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of EY758015 vs. ExPASy Swiss-Prot
Match: H3V1_DICDI (Histone H3.v1 OS=Dictyostelium discoideum GN=H3v1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 45/126 (35.71%), Postives = 61/126 (48.41%), Query Frame = 3 
Query:   84 TARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 461
            T+   T    PR ++       + PTT     P + R   +    IR+ + S + +I +LP  RLVREI   F   LR    A+LA+Q   EAYL  L ED+ L A HA R TI   D+   +R R
Sbjct:  495 TSASITTPTTPRIRVQRTTTTPTTPTT-----PRKKRRRRLVASVIRRLRNSVDFMIPRLPLSRLVREIMCLFDDGLRITPGALLAIQTTTEAYLTRLMEDSGLLASHAGRKTIRSVDMYAWKRAR 615
The following BLAST results are available for this feature:
BLAST of EY758015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H32_TETBO4.090e-1385.37Histone H3.2 (Fragment) OS=Tetrahymena borealis PE... [more]
H3V1_DICDI3.828e-1135.71Histone H3.v1 OS=Dictyostelium discoideum GN=H3v1 ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-030-B11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY758015 ID=EY758015; Name=EY758015; organism=Citrus sinensis; type=EST; length=611bp
CCCGCGTCCGGAGGCGTTTCTCCAGATCTGTGCATTTTGCAGTTTGTGTT
GGTGATTAAAGAGTAATGGCCCGTACGAAGCAAACCGCGCGCAAGTCAAC
TGGAGGAAAGGCTCCGAGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAAT
CTGCTCCAACAACTGGTGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGA
ACTGTCGCCCTACGTGAAATCCGCAAATATCAAAAGAGCACTGAGCTTTT
GATCCGCAAGCTGCCTTTCCAGCGGCTGGTTCGTGAAATTGCTCAAGATT
TCAAGACAGATTTGAGGTTCCAAAGCCACGCGGTTCTTGCGCTGCAGGAA
GCGGCAGAGGCTTATCTCGTGGGTCTGTTCGAGGACACCAACCTTTGTGC
TATCCATGCCAAGCGAGTCACCATTATGCCCAAGGATATTCAACTGGCAA
GGCGAATCCGAGGCGAGCGTGCTTAATTTGTGATTCCTTAGGTAGTCGTC
AGTTTCCTATTTAGTTTGCTAGTTTTTCTTTATTTCGGTTTTTACATGTA
AAGAATGATATGATGGATTGAAGAATATTTGGCATTTGATAAAAAAAAAA
AAAAAAAAAAA
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