EY757962

Overview
NameEY757962
Unique NameEY757962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: ABCD1_HUMAN (ATP-binding cassette sub-family D member 1 OS=Homo sapiens GN=ABCD1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.921e-18
Identity = 59/184 (32.07%), Postives = 89/184 (48.37%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLYNLS 569
            PQRPY  +GSLR Q+IYP                           +E++ RK    S  DL   L+ V L +IL R    +   +W  VLS GE+QR+  AR+   +P+  LLDE TSA+    E  +++  + AGI  +S+ HR +L+ +H  +L      Q   +  WK E +D  +  +L+
Sbjct:  543 PQRPYMSVGSLRDQVIYP-------------------------DSVEDMQRKGY--SEQDLEAILDVVHLHHILQREGGWEAMCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGIALLSITHRPSLWKYHTHLL------QFDGEGGWKFEKLDSAARLSLT 693          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: ABCD2_RAT (ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus GN=Abcd2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.692e-17
Identity = 61/185 (32.97%), Postives = 85/185 (45.95%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD-DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLYNLS 569
            PQRPY  LGSLR Q+IYP                            ++V     K  TD DL   L  V L +I+ R    D   +W  VLS GE+QR+  AR+   KP+  LLDE TSA+    E  +++    AGI+ +S+ HR +L+ +H  +L      Q   +  W+ E +D      LS
Sbjct:  548 PQRPYMSLGSLRDQVIYP----------------------------DSVDDMHEKGYTDRDLEHILHSVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISLLSITHRPSLWKYHTHLL------QFDGEGGWRFEQLDTAIRLTLS 698          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: ABCD1_MOUSE (ATP-binding cassette sub-family D member 1 OS=Mus musculus GN=Abcd1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.886e-17
Identity = 58/184 (31.52%), Postives = 89/184 (48.37%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLYNLS 569
            PQRPY  +GSLR Q+IYP   E+++                S Q+LE +               L  V L +IL R    +   +W  VLS GE+QR+  AR+   +P+  LLDE TSA+    E  +++  + AGI  +S+ HR +L+ +H  +L      Q   +  WK E +D  +  +L+
Sbjct:  543 PQRPYMSVGSLRDQVIYPDSAEDMRRKG------------CSEQQLEAI---------------LGIVHLRHILQREGGWEAVCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGIALLSITHRPSLWKYHTHLL------QFDGEGGWKFEKLDSAARLSLT 693          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: Y1467_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI1467 OS=Haemophilus influenzae GN=HI1467 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.398e-17
Identity = 56/160 (35.00%), Postives = 81/160 (50.62%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGHRRTLYDFHKRVLRI 491
            PQRPY   G+LR+ + YP                                  +  PS  +L + ++D  LG  +  LN  +   +W ++LS GE QR+AF R+LL+KP +V LDE+TSALDE  E  LY+ I+     +  +SVGHR TL  FH + L++
Sbjct:  459 PQRPYMPQGTLREAICYP----------------------------------NINPSHAELEQTMKDCALGKYIHALNVKN---DWQAILSPGELQRVAFIRILLTKPDVVFLDETTSALDETTENLLYQTIKERLPEMIILSVGHRSTLQQFHNKQLKL 581          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: ABCD2_DICDI (ABC transporter D family member 2 OS=Dictyostelium discoideum GN=abcD2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.168e-16
Identity = 58/178 (32.58%), Postives = 83/178 (46.63%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQE 551
            PQ+PY VLG+LR Q+IYP        + D  K  G+                    + DDL   L  V     + R  + D T +W + LS G++QR+A ARL   +PQ  +LDE TSA+ +  E  +YE  +  GIT  +V HR  L  +H  VL        + +  W+   ID +
Sbjct:  587 PQKPYLVLGTLRDQIIYPH-------SHDDMKKLGV--------------------TDDDLQHLLATVDPNLTIIRQWNWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAILDECTSAVSDEVEGKIYETCKKLGITLFTVSHRPQLRAYHDYVLLF------NGRGGWEWSKIDHD 731          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: ABCD3_DICDI (ABC transporter D family member 3 OS=Dictyostelium discoideum GN=abcD3 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 53/182 (29.12%), Postives = 82/182 (45.05%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSL-------DTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFI 542
            PQ+PY + G+L +Q++YP                                +K  +     + +  +   + Y+L R   +       D T+ W + LS GEQQ +A  RL+  KP+  L+DESTS++ ++ E  +Y   +  GIT ISVGHR +L  +H  +LR           NW LE I
Sbjct:  576 PQQPYLIFGTLEEQILYP------------------------------FSKKQKRIPKSIMRELFQRFDIDYLLDRERFIKKSAQVNDLTHNWLNQLSPGEQQLIAIIRLIYHKPKFALMDESTSSIPQSLEERVYSVAKELGITIISVGHRISLLKYHSTLLRF------DKDKNWYLEDI 721          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: ABCD1_DICDI (ABC transporter D family member 1 OS=Dictyostelium discoideum GN=abcD1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 53/182 (29.12%), Postives = 83/182 (45.60%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSL-------DTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFI 542
            PQ+PY + G+L +Q++YP                                +K  +     + +  +  ++ Y+L R   +       D T+ W + LS GEQQ +A  RL+  KP+  L+DESTS++ ++ E  +Y   +  GIT ISVGHR +L  +H  +LR           NW LE I
Sbjct:  561 PQQPYLIFGTLEEQILYP------------------------------FSKKQKRIPKSIMRELFQRFEIDYLLDRERFIKKSAQVNDLTHNWLNQLSPGEQQLIAIIRLIYHKPKFALMDESTSSIPQSLEERVYYVAKELGITIISVGHRISLLKYHSTLLRF------DKDKNWYLEDI 706          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: Y036_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI0036 OS=Haemophilus influenzae GN=HI0036 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.608e-15
Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = 3
Query:   21 QRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE--QIEAAGITYISVGHRRTLYDFHKRVL 485
            Q+PY   G+L   L YP   + +                                S    ++ L  V+LG++  +L   +   +W+ +LSLGEQQRLAFARL+L KP +  LDE+T+++DE  E  +Y+  Q E    T ISVGHR TL   H++ L
Sbjct:  460 QKPYVPQGNLMSALAYPNNADNI--------------------------------SHTQAVEILNKVQLGHLAEQL---EKEQDWTRILSLGEQQRLAFARLILHKPAVAFLDEATASMDEGLEFSMYQLLQQELPQTTIISVGHRSTLKTLHQQQL 581          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: PXA1_YEAST (Peroxisomal long-chain fatty acid import protein 2 OS=Saccharomyces cerevisiae GN=PXA1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.751e-14
Identity = 54/179 (30.17%), Postives = 87/179 (48.60%), Query Frame = 3
Query:   18 PQRPYTVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR---LNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFI 542
            PQ+PY   G +LR Q+IYP  ++E        K                           +L++ L +VKL Y+L R   L  LD   +W  +LS GE+QR+ FAR++  KP  V+LDE+T+A+    E +L+  ++     +IS+  R TL  +H+ +L I      +    W+L+ +
Sbjct:  683 PQKPYFSRGGTLRDQIIYPMSSDEFFDRGFRDK---------------------------ELVQILVEVKLDYLLKRGVGLTYLDAIADWKDLLSGGEKQRVNFARIMFHKPLYVVLDEATNAISVDMEDYLFNLLKRYRFNFISISQRPTLIKYHEMLLEIG----ENRDGKWQLQAV 830          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: Y1819_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1819c/MT1867 OS=Mycobacterium tuberculosis GN=Rv1819c PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14
Identity = 57/159 (35.85%), Postives = 72/159 (45.28%), Query Frame = 3
Query:   21 QRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI--EAAGITYISVGHRRTLYDFHKRVLRI 491
            Q PY  LG+LR  + YP              SA  +P  T    L  V                       + P  + LD   +W+ VLS GEQQR+AFAR+LL+KP+ V LDESTSALD   E  LY+ +  E      ISV HR  L   H+  L +
Sbjct:  498 QLPYVPLGTLRDVVCYPN-------------SAAAIPDATLRDTLTKVA----------------------LAPLCDRLDEERDWAKVLSPGEQQRVAFARILLTKPKAVFLDESTSALDTGLEFALYQLLRSELPDCIVISVSHRPALERLHENQLEL 621          
The following BLAST results are available for this feature:
BLAST of EY757962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
ABCD1_HUMAN9.921e-1832.07ATP-binding cassette sub-family D member 1 OS=Homo... [more]
ABCD2_RAT1.692e-1732.97ATP-binding cassette sub-family D member 2 OS=Ratt... [more]
ABCD1_MOUSE2.886e-1731.52ATP-binding cassette sub-family D member 1 OS=Mus ... [more]
Y1467_HAEIN8.398e-1735.00Uncharacterized ABC transporter ATP-binding protei... [more]
ABCD2_DICDI4.168e-1632.58ABC transporter D family member 2 OS=Dictyostelium... [more]
ABCD3_DICDI3.528e-1529.12ABC transporter D family member 3 OS=Dictyostelium... [more]
ABCD1_DICDI3.528e-1529.12ABC transporter D family member 1 OS=Dictyostelium... [more]
Y036_HAEIN4.608e-1533.76Uncharacterized ABC transporter ATP-binding protei... [more]
PXA1_YEAST1.751e-1430.17Peroxisomal long-chain fatty acid import protein 2... [more]
Y1819_MYCTU5.095e-1435.85Uncharacterized ABC transporter ATP-binding protei... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-029-F02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757962 ID=EY757962; Name=EY757962; organism=Citrus sinensis; type=EST; length=859bp
TTCGTCGACCCACGCGTCCGCAGAGACCATATACGGTTTTAGGTAGTCTT
CGTCAACAATTGATTTATCCTACGTGGACTGAAGAAGTGAAACCGGCGTC
TGATGCTGCGAAATCCGCTGGTTTAGTGCCATTCTTGACATCAGCACAAA
AATTGGAAAATGTGGGAAGAAAGTCTAGCAAGCCCTCAACAGATGATCTA
ATTAAGGCTCTAGAGGATGTCAAACTTGGCTATATCTTGCCTCGTCTCAA
TAGCTTGGACACAACATATGAGTGGTCCAGTGTTCTGTCCCTTGGGGAGC
AGCAGCGCCTTGCTTTTGCACGTTTGTTGCTTTCAAAACCACAGATAGTT
CTATTGGATGAGTCTACCAGTGCTTTAGACGAAGCCAACGAGGCTCATTT
ATATGAGCAAATTGAAGCAGCAGGCATAACATATATTAGTGTCGGCCATC
GGCGAACCTTGTATGATTTCCACAAAAGGGTGTTGCGCATATCCACAGTG
GATCAGAACAGTAGTCAAAGTAATTGGAAGCTTGAGTTTATTGATCAAGA
ATCCTTGTATAATCTGTCAAGGCGATAGTAACTGCCCATGTAGTCAATGA
TTCTCTTTCATCANGTGATTAATACCTAGTCATATTGGAAAGATGAAGCA
AGACGNTGGAGGGCTTTCTTGNTAGAACCGTACATTGAAAATGGGCTATT
GTATGACCCAAATCAGATTTTGCCCATTTCTGTATATTTTCCACTCAGTT
TCCGGGCAGCAATTAATACCCCTGTNCTGCTTTCATGTAAGAACCGTACA
TTGAAAATAGCTATTGTAATGACTCAAATAAGATTTTGCCCAAAAAAAAA
AAAAAAAAA
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