EY757938

Overview
NameEY757938
Unique NameEY757938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.080e-22
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+     + A+EWT+ YA
Sbjct:   59 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 146          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.080e-22
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            +YP   PKV F TK++HPNI+  G ICLDILKD+WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT++ +    A+ WT+ YA
Sbjct:   59 DYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYA 146          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.716e-22
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 271
            +YP   PKV F TK+YHPNID  G ICLDILK++WSPA     VLLSI +LL+ PNP+DPL   IA  +K ++++   TA++WT+ YA G
Sbjct:   60 DYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKYAMG 149          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.716e-22
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:   59 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.716e-22
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:   59 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.716e-22
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:   59 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.716e-22
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:   59 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.716e-22
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:   59 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.052e-22
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            +YP   PK+ F TKIYHPNI+  G ICLDIL+ +WSPAL +  VLLSI +LL  PNPDDPL  +IA+ +K+++ +    A+EWT+ YA
Sbjct:   59 DYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 146          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.052e-22
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            +YP   PK+ F TKIYHPNI+  G ICLDIL+ +WSPAL +  VLLSI +LL  PNPDDPL  +IA+ +K+++ +    A+EWT+ YA
Sbjct:   59 DYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 146          
The following BLAST results are available for this feature:
BLAST of EY757938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
UBC2_CAEEL2.080e-2256.82Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC29_ARATH2.080e-2256.82Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC12_ARATH2.716e-2254.44Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UB2D2_XENLA2.716e-2256.82Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT2.716e-2256.82Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE2.716e-2256.82Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN2.716e-2256.82Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN2.716e-2256.82Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UB2D1_MOUSE6.052e-2254.55Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN6.052e-2254.55Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-029-C12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757938 ID=EY757938; Name=EY757938; organism=Citrus sinensis; type=EST; length=476bp
AGAATATCCTATGGCTGCTCCAAAGGTCCGATTTCTTACCAAGATATATC
ATCCTAACATTGATAAGCTTGGAAGGATTTGTCTTGATATTCTGAAAGAC
AAGTGGAGTCCAGCTCTCCAGATTCGGACTGTACTGTTGAGCATTCAAGC
ACTTCTGAGTGCTCCTAACCCCGATGATCCTCTCTCCGAGAACATTGCCA
AACACTGGAAAACAAATGAGGCCGAAGCAGTTGAAACAGCGAAGGAATGG
ACACGTTTATATGCCAGTGGTGCTTGATGACATGGTGGAAAATATCACTT
CATTCAAATAACAATTGTGCAATGTATGCTATTCACTGTCTGTTTAAAAT
GGAAAATTTGGAAGAATTGAATTGATGTTTGAACATTCGGAGTTTGACAT
TCTGAAAGCTTCCATCTTACCGCACATGTCAATTATTTTCTTCTTGTGGA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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