EY757826

Overview
NameEY757826
Unique NameEY757826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757826 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.670e-53
Identity = 92/149 (61.74%), Postives = 118/149 (79.19%), Query Frame = 3
Query:   21 SSSCFPATKKTNNDITSIASNGGPVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 467
            S++  P ++++N       SNGG ++CM+VWP  G+KKFETLSYLPPLS E LLK++ YL+RS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GC   TQV+ EV EV+KEYP  + RIIGFDN RQVQ +SF+A+KPPG
Sbjct:   21 STAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168          
BLAST of EY757826 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.379e-52
Identity = 93/132 (70.45%), Postives = 107/132 (81.06%), Query Frame = 3
Query:   66 TSIASNGGPVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 461
            T I SNG  V+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PCLEFEL KG+VY EH+ SP YYDGRYWTMWKLPM+G TD  QV+KEV EV   YP +FVR+IGF+N RQVQCISF+A  P
Sbjct:    2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133          
BLAST of EY757826 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.014e-51
Identity = 91/149 (61.07%), Postives = 118/149 (79.19%), Query Frame = 3
Query:   21 SSSCFPATKKTNNDITSIASNGGPVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 467
            S++  P  ++++  + ++ SNGG ++CM+VWP  G KKFETLSYLPPLS + LLK++ YLLR+GWIPCLEF  + G+VYRE+ +SP YYDGRYWTMWKLPM+GC DATQV KE+ E  K YP +F R+IGFDN +Q QC+SF+A KPPG
Sbjct:   22 STASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168          
BLAST of EY757826 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.462e-49
Identity = 90/151 (59.60%), Postives = 116/151 (76.82%), Query Frame = 3
Query:   21 SSSCFPATKKTNNDITS----IASNGGPVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 461
            S++ FP++ K +N          SNGG V+CM+VWPP G  KFETLSYLP L++E L+KE+ YLLR+ W+PCLEF+LE G + R+++ SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E  K YP +F+R+IGFDN RQVQCISF+  KP
Sbjct:   21 STAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170          
BLAST of EY757826 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.764e-47
Identity = 89/151 (58.94%), Postives = 112/151 (74.17%), Query Frame = 3
Query:   21 SSSCFPATKKTNNDITS----IASNGGPVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 461
            S + FP++K  +N          SNG  V+CM+VWPP   KKFETLSYLP L+ E L+KE+ YLL++ W+PCLEFE E G + R + +SPGYYDGRYW MWKLPM+GCT+A+QVL EV E  K YP++F+R+IGFDN RQVQCISF+  KP
Sbjct:   37 SMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186          
BLAST of EY757826 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.010e-47
Identity = 86/122 (70.49%), Postives = 101/122 (82.79%), Query Frame = 3
Query:  102 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 467
            M+VWPP GLKKFETLSYLPPL+ E LL E++YLL  GWIP LEFE++ G+VYREH  SPGYYDGRYWTMWKLPM+G TD  QV+ EV EV+K  P +FVR IGF++KR+VQCISF+A KP G
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122          
BLAST of EY757826 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.651e-45
Identity = 85/149 (57.05%), Postives = 110/149 (73.83%), Query Frame = 3
Query:   21 SSSCFPATKKTNNDITSIASNGGPVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 467
            S++  P  +++   +  + SNGG ++CM+VWP  G KKFETLSYLPPL+ E LLK++ YLLR+ W+PCLEF  E G+VYRE+ +SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E    YP     I+GFDN RQ Q ++F+A KP G
Sbjct:   21 STASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166          
BLAST of EY757826 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.196e-45
Identity = 78/107 (72.90%), Postives = 96/107 (89.72%), Query Frame = 3
Query:  147 SYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 467
            +YLPPLS EALLK++ YL+RS W+PCLEF  + G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106          
BLAST of EY757826 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.223e-41
Identity = 76/133 (57.14%), Postives = 98/133 (73.68%), Query Frame = 3
Query:   66 TSIASNGGPVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCISFLAAKP 461
            T   +NG  V CM+VW P    KFETLSYLPPLS +AL K+I Y+++SGW PC+EF+++ G V RE  + PGYYDGRYWTMWKLPM+GCTD+  VL+E+ E +K Y    ++R +GFDN RQVQC SF+  +P
Sbjct:   47 TKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178          
BLAST of EY757826 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.230e-33
Identity = 72/160 (45.00%), Postives = 96/160 (60.00%), Query Frame = 3
Query:    6 NTTRPSSSCFPATKKTNNDITSIASNGGPVQC--MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 461
            ++ RP ++  PA K         A    P Q   M VW P   K FET SYLPPLSDE +  ++ Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + FL  +P
Sbjct:   20 SSVRPMAALKPAVKA--------APVAAPAQANQMMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
The following BLAST results are available for this feature:
BLAST of EY757826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_AEGTA3.670e-5361.74Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA2.379e-5270.45Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE2.014e-5161.07Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH2.462e-4959.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA1.764e-4758.94Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL3.010e-4770.49Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SACHY1.651e-4557.05Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT8.196e-4572.90Ribulose bisphosphate carboxylase small chain clon... [more]
RBS_MARPA3.223e-4157.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_CHLRE3.230e-3345.00Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-027-H12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757826 ID=EY757826; Name=EY757826; organism=Citrus sinensis; type=EST; length=671bp
TTTCGAACACCACGCGTCCGTCTTCTTCTTGCTTCCCAGCAACCAAGAAG
ACCAACAATGACATTACTTCCATTGCAAGCAACGGTGGACCAGTCCAATG
CATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCAT
ACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTT
CTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATG
GGTGTACCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACT
GGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTT
TTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCG
AATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTG
CTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACC
CATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTC
GATCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGC
TGCTGCTCAAACTTTTTTGGTTTNNAAAANAAAANNANAAAANAAAAANA
AAAAAAAAAAAAAAANAAANG
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