EY757635

Overview
NameEY757635
Unique NameEY757635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_CANFA (40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.251e-13
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 188
            +YS  ++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   94 KYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_BOVIN (40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.251e-13
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 188
            +YS  ++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   94 KYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_DROME (40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.246e-13
Identity = 36/59 (61.02%), Postives = 40/59 (67.80%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 188
            +Y    S+ LD KLRDDLERLKKIR+HRGLRHYWGLRVRGQH             SKK+
Sbjct:   94 KYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.242e-13
Identity = 35/59 (59.32%), Postives = 40/59 (67.80%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 188
            +YS   S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH             SKK+
Sbjct:   94 KYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_CHLRE (40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.107e-12
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 137
            R+S   S+ LD  +RDDLERLKKIR HRGLRHYWGLRVRGQH
Sbjct:   95 RFSQLTSSQLDTVMRDDLERLKKIRGHRGLRHYWGLRVRGQH 136          
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_YEAST (40S ribosomal protein S18 OS=Saccharomyces cerevisiae GN=RPS18A PE=1 SV=4)

HSP 1 Score: 66.2402 bits (160), Expect = 6.779e-11
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 3
Query:   27 VSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 137
            ++N ++ KLRDDLERLKKIR HRG+RH+WGLRVRGQH
Sbjct:  101 LANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQH 137          
The following BLAST results are available for this feature:
BLAST of EY757635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RS18_CANFA3.251e-1359.3240S ribosomal protein S18 OS=Canis familiaris GN=R... [more]
RS18_BOVIN3.251e-1359.3240S ribosomal protein S18 OS=Bos taurus GN=RPS18 P... [more]
RS18_DROME4.246e-1361.0240S ribosomal protein S18 OS=Drosophila melanogast... [more]
RS18_SPOFR7.242e-1359.3240S ribosomal protein S18 OS=Spodoptera frugiperda... [more]
RS18_CHLRE2.107e-1276.1940S ribosomal protein S18 OS=Chlamydomonas reinhar... [more]
RS18_YEAST6.779e-1175.6840S ribosomal protein S18 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-025-G04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757635 ID=EY757635; Name=EY757635; organism=Citrus sinensis; type=EST; length=448bp
CCACGCGTCCGAGGTACTCCCTGGCCGTGTCTAATGCATTGGACATGAAG
CTTAGGGATGATCTTGAGCGCTTGAAGAAGATCAGAAACCACCGTGGTCT
ACGACACTACTGGGGTCTTAGAGTTCGTGGACAGCACACCAAGACTACTG
GACGCAGGGGAAAGACCGTTGGTGTCTCCAAGAAGCGTTGAGTTTTGTCA
TCTCCTATTGGTTCATCAAGCTGCAAGTTTTGTTTACATGTTAGTTTTGC
ATCGTTCAGTATGTCTGTCTTGTAGAAGAATTGTTTTTGATAATTTTCTT
CAGTTTATTTTCTTAGGTTGTCTTTTTGACTGAATTGAAAGGAATTCCAT
TTGATATTGTGATTAAAAAGTCATCCATGTTTTATTTAATCAGGAGGGTA
ATATTTCAGTTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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