EY757536

Overview
NameEY757536
Unique NameEY757536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757536 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.371e-11
Identity = 40/122 (32.79%), Postives = 62/122 (50.82%), Query Frame = 2
Query:   32 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 397
            PS++FIDEIDA+ T+R           ++   +E + T+ +LL +LDGFD+   V  + ATN               DRKI    P+ K R  I +IH SK+ +S+ V+L  +      ++G
Sbjct:  282 PSIVFIDEIDAVGTKRYDA--------HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSG 395          
BLAST of EY757536 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.709e-11
Identity = 42/120 (35.00%), Postives = 60/120 (50.00%), Query Frame = 2
Query:   17 AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAK 376
            AK   PS+IFIDE+DA+ T+R    K        A  +E + T+ +LL +LDGF     V  +AATN               DRKI    PN + R  I++IH+ K+ +S  V+    A+
Sbjct:  259 AKEKAPSIIFIDELDAIGTKRFDSEK--------AGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 370          
BLAST of EY757536 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 44/127 (34.65%), Postives = 60/127 (47.24%), Query Frame = 2
Query:   17 AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 397
            AK   P++IFIDEIDA+   R             +  +E + TL QLL  +DGF+T   V  + ATN              FDR I I  P+ +GR  ILK+H   + M ++V+L   A    G  G
Sbjct:  267 AKKKAPTIIFIDEIDAVGASRT--------EANTSGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRTLTMEETVNLPEIAGLTEGKNG 385          
BLAST of EY757536 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 44/161 (27.33%), Postives = 70/161 (43.48%), Query Frame = 2
Query:   17 AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGXXXXXXXXXXXXXXXXKGHESILSSDMDDAVDRL 499
            AK   P++IFIDE+DA+ T+R    K        +  +E + T+ +LL +LDGF +   V  LAATN               DRKI    P+   R +IL+IH+ K+   D ++    A++   + G                 G  S+   D  + +  +
Sbjct:  270 AKEKAPTIIFIDELDAIGTKRFDSEK--------SGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422          
BLAST of EY757536 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 41/127 (32.28%), Postives = 64/127 (50.39%), Query Frame = 2
Query:   17 AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 397
            AK   P++IFIDE+DA+ T+R   F         +  +E + T+ +LL +LDGF +   +  +AATN               DRKI    PN + R  IL+IH+ K+ +S  V+    A++   + G
Sbjct:  257 AKEKGPTIIFIDELDAIGTKR---FDSEV-----SGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNG 375          
BLAST of EY757536 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 45/136 (33.09%), Postives = 75/136 (55.15%), Query Frame = 2
Query:   11 ERAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-------DTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 397
            E A+   P+ IFIDEID++ +RR       T   + A+ + +     +LL+++DG        D  K V+ LAATN               +++I I  P+AKGR E+L+I   +++++D VDL+S A+N+ G++G
Sbjct:  295 EMARFYSPATIFIDEIDSICSRRG------TSEEHEASRRVKA----ELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRR--LEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSG 418          
BLAST of EY757536 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 45/136 (33.09%), Postives = 75/136 (55.15%), Query Frame = 2
Query:   11 ERAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-------DTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 397
            E A+   P+ IFIDEID++ +RR       T   + A+ + +     +LL+++DG        D  K V+ LAATN               +++I I  P+AKGR E+L+I   +++++D VDL+S A+N+ G++G
Sbjct:  295 EMARFYSPATIFIDEIDSICSRRG------TSEEHEASRRVKA----ELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRR--LEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSG 418          
BLAST of EY757536 vs. ExPASy Swiss-Prot
Match: CDAT_PLAF7 (Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate 3D7) GN=PF07_0047 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 41/129 (31.78%), Postives = 61/129 (47.29%), Query Frame = 2
Query:   11 ERAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNXXXXXXXXXXXXXXFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 397
            ++A    P +IFIDEID++A +R             +  +  +  ++QLL  +DG      V+ LAATN              FDR+I I  P+ +GR EIL     K+K+   V+L   AK   G+ G
Sbjct:  614 KKASEKTPCIIFIDEIDSIANKRS-----------KSNNELEKRVVSQLLTLMDGLKKNNNVLVLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLRKIAKECHGYVG 731          
The following BLAST results are available for this feature:
BLAST of EY757536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
PRS4A_ARATH4.371e-1132.7926S proteasome regulatory subunit 4 homolog A OS=A... [more]
PR6AA_XENLA5.709e-1135.0026S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PSMR_METB67.457e-1134.65Proteasome-activating nucleotidase OS=Methanoregul... [more]
PRS6A_YEAST7.457e-1127.3326S protease regulatory subunit 6A OS=Saccharomyce... [more]
PRS6A_DICDI9.739e-1132.2826S protease regulatory subunit 6A homolog OS=Dict... [more]
KTNA1_MACFA9.739e-1133.09Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN9.739e-1133.09Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
CDAT_PLAF79.739e-1131.78Putative cell division cycle ATPase OS=Plasmodium ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-024-E11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757536 ID=EY757536; Name=EY757536; organism=Citrus sinensis; type=EST; length=900bp
CCACGCGTCCGAGAGAGCCAAGGTAAACAAACCATCTGTTATATTCATTG
ATGAAATTGATGCACTGGCTACTAGGCGTCAAGGAATTTTCAAGGATACT
ACGGACCACTTGTATAATGCTGCCACCCAAGAGAGGGAAACCACACTGAA
TCAACTCTTGATAGAACTTGATGGGTTTGATACTGGTAAAGGTGTTATAT
TCTTAGCTGCAACTAATCGGAGGGATTTGCTTGATCCTGCTCTTCTTAGA
CCTGGTCGGTTTGATCGAAAGATAAGAATTCGCGCTCCTAATGCAAAAGG
GAGAACAGAAATTCTGAAAATTCATGCAAGCAAAGTGAAGATGTCAGATT
CTGTTGATTTATCTTCATACGCCAAAAACTTACCCGGATGGACAGGGGCA
AGGTTGGCTCAGCTGGTCCAAGAGGCTGCTCTTGTGGCAGTTAGGAAAGG
GCATGAATCCATTCTTTCGTCAGACATGGATGATGCAGTTGACCGACTTA
CGGTGGGACCCAAACGTCGTGGTATAGAATTAGGTCATCAGGGACAGAGC
CGTAGAGCTGCTACCGAAGTTGGAGTTGCCATGATTTCTCATCTCCTCAG
ACGATATGAAAATGCAAAAGTTGAATGTTGTGATCGCATTTCTATTGTTC
CTCGTGGTCAGACATTATCACAATTAGTATTTCATCGGCTTGACGATGAA
TCATACATGTTTGAGCGGCGTCCACAATTGCTGCATCGCCTCANGNTTTT
ACTAGGAGGGANGGCTGCAGAGGAAGTCATTTATGGACAGGACACGTCCA
GAGCATCTGTTAACTACCTTGCTGATGCATCTTGGCTGGCTCGTAAAATT
TTACCATATGGAAATTNGAGAATCCATGGTCATACATGGAAACCACCTCA
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