EY757516

Overview
NameEY757516
Unique NameEY757516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757516 vs. ExPASy Swiss-Prot
Match: TYPA_BUCBP (GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=typA PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.240e-17
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 3
Query:    6 RPGSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCK 320
            R G L+A + G    ++L + Q RG++F+  G  VY+GQIVGIH R  DL++N    K  TN+R S  ++ + L TP+  +L+  I +I +DELVE+TP SIR+ K
Sbjct:  489 RNGVLIANKTGQAIGFSLFNLQNRGKLFITHGTKVYEGQIVGIHNRVNDLTVNCLSGKKLTNMRASGSDEAITLTTPIKMTLEYAISFINDDELVEITPKSIRLRK 594          
BLAST of EY757516 vs. ExPASy Swiss-Prot
Match: TYPA_HELPY (GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori GN=typA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 45/116 (38.79%), Postives = 72/116 (62.07%), Query Frame = 3
Query:   12 GSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCK---NPKFVKRGR 347
            G+L++ E+G  T+++L + QERG +F+ P   VY G ++G H R  DL +N  K K  TN+R S  +  + L  P    L+  +E+I+EDE++EVTPL++R+ K   +P   KR +
Sbjct:  483 GALISMENGEATAFSLFNIQERGTLFINPQTKVYVGMVIGEHSRDNDLDVNPIKSKHLTNMRASGSDDAIKLTPPRTMVLERALEWIEEDEILEVTPLNLRIRKKILDPNMRKRAK 598          
BLAST of EY757516 vs. ExPASy Swiss-Prot
Match: TYPA_HELPJ (GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori J99 GN=typA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.761e-17
Identity = 45/116 (38.79%), Postives = 72/116 (62.07%), Query Frame = 3
Query:   12 GSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCK---NPKFVKRGR 347
            G+L++ E+G  T+++L + QERG +F+ P   VY G ++G H R  DL +N  K K  TN+R S  +  + L  P    L+  +E+I+EDE++EVTPL++R+ K   +P   KR +
Sbjct:  483 GALISMENGEATAFSLFNIQERGALFINPQTKVYVGMVIGEHSRDNDLDVNPIKSKHLTNMRASGSDDAIKLTPPRTMVLERALEWIEEDEILEVTPLNLRIRKKILDPNMRKRAK 598          
The following BLAST results are available for this feature:
BLAST of EY757516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TYPA_BUCBP1.240e-1743.40GTP-binding protein TypA/BipA homolog OS=Buchnera ... [more]
TYPA_HELPY2.761e-1738.79GTP-binding protein TypA/BipA homolog OS=Helicobac... [more]
TYPA_HELPJ2.761e-1738.79GTP-binding protein TypA/BipA homolog OS=Helicobac... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-024-C12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757516 ID=EY757516; Name=EY757516; organism=Citrus sinensis; type=EST; length=832bp
CCACGCGTCCGGGTTCATTGGTTGCCTTTGAGGATGGAACGACTACTTCT
TATGCTCTTTCTAGCTCACAGGAAAGGGGGCAGATGTTTCTTGGTCCCGG
AGTGGATGTTTACAAAGGTCAAATAGTAGGCATCCATCAGCGGCCCGGTG
ATTTATCTCTTAATGTGTGCAAGAAAAAGGCAGCCACGAATATACGTTCC
AACAAAGAACAGACAGTGGTCCTTGATACTCCTTTGGATTACAGTCTGGA
CGACTGCATAGAGTACATTCAAGAAGATGAACTAGTGGAGGTCACTCCCT
TGAGCATCCGTATGTGCAAAAATCCAAAGTTTGTGAAAAGGGGGCGGTAA
ATATCTCTTGGATTTACACAGTGTGGATTAGTCAACAAAGCTTTCCTTGC
GATATTACGAATTAGAGCGAAGCTACATATTTCTGCAATTGGATTCTTTT
CTCATTTTGCTCCATTTGAAGCTGCCTTCACAGCTATATTTTTATATACT
GGGATTCTTTGGAAAAATTCAGGTATGTTTGAGTTTTTCCTCGTATAATT
ATTGTATATACAGTTAGGGCACAGTGAAGTCATAATTTTGTTAAAGAGGT
TTAGTAGCCAATATGCTGTTAGGTAATGGGGCAGCTGAAGATTTTGAGTT
GAGCGGCAATGCAGATTCAGACAGTCACTTTGCTAACCGACTGAAAATGA
TAAATTTCAGGTTTATTGTAATTCTATCTCCAATTTTAGCATAATAATAA
ATCAAAACATATTATAAACAAAGTATTTTTTTTCTTTCATAAAATTATGG
NTATTTATTTAAAAAAAAAAAAAAAAAAAAAA
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