EY757483

Overview
NameEY757483
Unique NameEY757483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757483 vs. ExPASy Swiss-Prot
Match: NVL_HUMAN (Nuclear valosin-containing protein-like OS=Homo sapiens GN=NVL PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 2
Query:    2 IDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFAL 367
            ID+I   R E  S + +  +   +L  ++ L+   A+ ++ V+ ATNR D LD AL R GR DR+I    P+E SR  IL+   R++ L +  D   +A    G  GA+L A+C EA M A+
Sbjct:  366 IDAITPKR-EVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAV 486          

HSP 2 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 47/144 (32.64%), Postives = 78/144 (54.17%), Query Frame = 2
Query:   65 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKI---HSRRMNLMRGIDLKKIAE--KMNGASGAELKAVCTEAGMFALRER-----------RIHVTQEDFEMAVAKVMKKETEKN 448
            R + +LL ++DG EA  ++ ++ ATNR DI+D A+LRPGR+D+ +    P    RL ILK    +  +  L   ++L+ IA   + +  +GA+L A+  EA + ALR+             + V+ + FE A  KV    ++K+
Sbjct:  700 RVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKD 843          
BLAST of EY757483 vs. ExPASy Swiss-Prot
Match: YCF2_MESVI (Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = 2
Query:    2 IDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN-LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERR-----IHVTQED-FEMAVAKVMK 430
            + +IG + +E  + N D +   T+L + L  +DG++  N + ++ ATNRI+ LD A++RPGR DR+I F  P  E R DIL+I  R    L+       +AE+  G +G +L+ +     + +  E R     I V  ED F+ A+ +V +
Sbjct:  463 LKTIGDS-IEGSNINIDQKPSDTVLMQFLIYMDGYKKRNDLIIIGATNRIETLDDAIMRPGRFDRQIVFSPPFFEERKDILRIFLRNTKALVDDTTKTMMAERSIGLNGCDLRLLADNILLLSALESRNQQKTIPVINEDTFDRALERVSR 612          
BLAST of EY757483 vs. ExPASy Swiss-Prot
Match: PEX6_SCHPO (Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe GN=pex6 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 43/129 (33.33%), Postives = 75/129 (58.14%), Query Frame = 2
Query:    2 IDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK--IKVLMATNRIDILDQALLRPGRIDRKIEFP-NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMN-GASGAELKAVCTEAGMFALRER 376
            +DSI   R    S +  + + R + +LL +LD     N   + V+ ATNR D+LD +LLRPGR D+ +    N +EES+  +L+  ++   L   IDL +IA+  +   +GA++ A+C++A + A++ +
Sbjct:  756 LDSIAPHR--GNSSDSGNVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIKRK 882          
BLAST of EY757483 vs. ExPASy Swiss-Prot
Match: NVL_MOUSE (Nuclear valosin-containing protein-like OS=Mus musculus GN=Nvl PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 46/136 (33.82%), Postives = 73/136 (53.68%), Query Frame = 2
Query:   65 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKI---HSRRMNLMRGIDLKKIAE--KMNGASGAELKAVCTEAGMFALRER-----------RIHVTQEDFEMAVAKV 424
            R + +LL ++DG E   ++ +L ATNR DI+D A+LRPGR+D+ +    P    R+ ILK    +  +  L   ++L+ IA   + N  +GA+L A+  EA + ALR+             + V+ + FE A  KV
Sbjct:  699 RVVNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIANDLRCNCYTGADLTALVREASLCALRQEITAQKNGVGAGELKVSHKHFEDAFKKV 834          
The following BLAST results are available for this feature:
BLAST of EY757483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
NVL_HUMAN3.602e-1136.89Nuclear valosin-containing protein-like OS=Homo sa... [more]
YCF2_MESVI4.704e-1133.11Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=... [more]
PEX6_SCHPO8.024e-1133.33Peroxisomal ATPase pex6 OS=Schizosaccharomyces pom... [more]
NVL_MOUSE8.024e-1133.82Nuclear valosin-containing protein-like OS=Mus mus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-023-H10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757483 ID=EY757483; Name=EY757483; organism=Citrus sinensis; type=EST; length=682bp
AATTGACAGTATCGGATCTGCCCGAATGGAATCTGGCAGCGGAAATGGTG
ACAGTGAGGTGCAGAGGACTATGCTGGAGCTGCTCAACCAGCTTGATGGA
TTTGAAGCATCAAACAAAATTAAGGTTCTCATGGCGACAAATCGAATTGA
TATTCTCGATCAAGCTCTTCTCAGGCCAGGACGAATTGACAGAAAGATTG
AATTTCCAAATCCTAATGAAGAGTCTCGTCTTGATATCCTAAAAATTCAT
TCAAGAAGAATGAATTTAATGCGTGGCATTGATTTGAAGAAGATTGCCGA
GAAGATGAATGGTGCATCTGGTGCGGAGCTTAAGGCTGTGTGCACAGAAG
CCGGTATGTTTGCTCTAAGAGAGAGAAGGATCCATGTAACACAGGAAGAT
TTTGAGATGGCAGTGGCCAAGGTCATGAAGAAAGAAACAGAGAAGAACAT
GTCCTTGCGGAAGTTGTGGAAGTAATCATTTCCATGTGCTGTGCTGTGTA
TTTGCTTATTTTCTGAGCAAGATTCAAGTAGTCCTTAACGGCACTCACTC
GTGTTCTGGGACATTTGCACGATAGGCCCTTTTAGCCTGACTGTTGTCTT
TTCTTGCGCTCTAGCCTCTTATGATAAACAAATTTGCAATCTATTTTATC
TAAATTTAAAAAAAAAAAAAAAAAAAAAAAAA
back to top